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¹H NMR of Conformationally Flexible Molecules: Temporal Resolution00:52

¹H NMR of Conformationally Flexible Molecules: Temporal Resolution

At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
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Step growth polymerization involves bi or multifunctional monomers. Bifunctional monomers react to form linear step growth polymers, whereas multifunctional monomers react to form non-linear or branched polymers.
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The extent of the...

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Controlling the Size, Shape and Stability of Supramolecular Polymers in Water
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Published on: August 2, 2012

PAMAM dendrimers undergo pH responsive conformational changes without swelling.

Yi Liu1, Vyacheslav S Bryantsev, Mamadou S Diallo

  • 1Materials and Process Simulation Center (M/C 139-74), California Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, USA.

Journal of the American Chemical Society
|February 10, 2009
PubMed
Summary
This summary is machine-generated.

Atomistic molecular dynamics simulations reveal that polyamidoamine (PAMAM) dendrimers undergo significant conformational changes with pH. This pH-triggered transformation from a dense core to a dense shell structure could enhance their utility as drug delivery vehicles.

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Area of Science:

  • Computational chemistry
  • Materials science
  • Nanotechnology

Background:

  • Polyamidoamine (PAMAM) dendrimers are highly branched macromolecules with potential applications in drug delivery.
  • Understanding their conformational behavior in solution is crucial for optimizing their function.
  • Previous studies have suggested pH-dependent structural changes, but atomistic details were lacking.

Purpose of the Study:

  • To investigate the pH-dependent conformational changes of a G4-NH(2) PAMAM dendrimer using atomistic molecular dynamics (MD) simulations.
  • To compare simulation predictions with experimental data from small angle neutron scattering (SANS).
  • To elucidate the structural basis for pH-triggered encapsulation and release of guest molecules.

Main Methods:

  • Atomistic molecular dynamics (MD) simulations were performed on a G4-NH(2) PAMAM dendrimer in aqueous solution.
  • Explicit water molecules and counterions were included in the simulations.
  • The Dreiding III force field, optimized using quantum mechanics, was employed.

Main Results:

  • Simulations predicted a minimal change in the radius of gyration (R(g)) of the dendrimer across a pH range of approximately 5 to 10.
  • R(g) varied from 21.1 Å at pH ~10 to 22.1 Å at pH ~5, consistent with experimental SANS data (21.4 Å to 21.5 Å).
  • Despite minimal R(g) change, a dramatic conformational transformation was observed: a dense core at high pH and a dense shell at low pH due to ion pairing.

Conclusions:

  • PAMAM dendrimers exhibit significant pH-induced conformational changes, transitioning from a 'dense core' to a 'dense shell' structure.
  • This pH-triggered structural transformation, particularly the formation of a dense shell at low pH, could facilitate the encapsulation and release of guest molecules.
  • Dendrimers show promise as tunable drug delivery vehicles, with pH serving as an effective trigger mechanism.