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Updated: Jun 25, 2026

Isolation of Viral Replication Compartment-enriched Sub-nuclear Fractions from Adenovirus-infected Normal Human Cells
Published on: November 12, 2015
Temporal regulation of the Mre11-Rad50-Nbs1 complex during adenovirus infection
Kasey A Karen1, Peter J Hoey, C S H Young
1Department of Molecular Genetics and Microbiology, School of Medicine, Stony Brook University, Stony Brook, New York 11794, USA.
Abstract:
Adenovirus infection induces a cellular DNA damage response that can inhibit viral DNA replication and ligate viral genomes into concatemers. It is not clear if the input virus is sufficient to trigger this response or if viral DNA replication is required. Adenovirus has evolved two mechanisms that target the Mre11-Rad50-Nbs1 (MRN) complex to inhibit the DNA damage response. These include E4-ORF3-dependent relocalization of MRN proteins and E4-ORF6/E1B-55K-dependent degradation of MRN components. The literature suggests that degradation of the MRN complex due to E4-ORF6/E1B-55K does not occur until after viral DNA replication has begun. We show that, by the time viral DNA accumulates, the MRN complex is inactivated by either of the E4-induced mechanisms and that, with E4-ORF6/E1B-55K, this inactivation is due to MRN degradation. Our data are consistent with the conclusion that input viral DNA is sufficient to induce the DNA damage response. Further, we demonstrate that when the DNA damage response is active in E4 mutant virus infections, the covalently attached terminal protein is not cleaved from viral DNAs, and the viral origins of replication are not detectably degraded at a time corresponding to the onset of viral replication. The sequences of concatemeric junctions of viral DNAs were determined, which supports the conclusion that nonhomologous end joining mediates viral DNA ligation. Large deletions were found at these junctions, demonstrating nucleolytic procession of the viral DNA; however, the lack of terminal protein cleavage and terminus degradation at earlier times shows that viral genome deletion and concatenation are late effects.
Insights
Adenovirus infection triggers a DNA damage response even from input viral DNA, not requiring viral replication. Adenovirus inactivates the MRN complex via E4-ORF3 or E4-ORF6/E1B-55K proteins, preventing DNA damage.
Area of Science:
- Molecular Virology
- DNA Damage Response
- Cellular Biology
Background:
- Adenovirus infection elicits a cellular DNA damage response (DDR).
- This DDR can inhibit viral DNA replication and lead to viral genome concatenation.
- Adenovirus employs E4-ORF3 and E4-ORF6/E1B-55K proteins to counteract the DDR by targeting the Mre11-Rad50-Nbs1 (MRN) complex.
Purpose of the Study:
- To determine if input adenovirus DNA alone is sufficient to trigger the DDR.
- To investigate the timing and mechanisms of MRN complex inactivation by adenovirus E4 proteins.
- To elucidate the impact of DDR activation on viral DNA processing and genome integrity.
Main Methods:
- Analysis of MRN complex localization and degradation during adenovirus infection.
- Assessment of viral DNA replication and processing in the presence of functional or mutated E4 proteins.
- Sequencing of viral DNA concatemeric junctions to identify ligation mechanisms and genomic alterations.
Main Results:
- Input adenovirus DNA is sufficient to induce the DDR.
- The MRN complex is inactivated by E4-ORF3 (relocalization) or E4-ORF6/E1B-55K (degradation) before significant viral DNA replication occurs.
- DDR activation in E4 mutant infections prevents terminal protein cleavage and degradation of replication origins.
- Nonhomologous end joining mediates viral DNA ligation, resulting in concatemers with large deletions, indicating late-stage processing.
Conclusions:
- Adenovirus actively suppresses the host DDR early in infection using E4 proteins to target the MRN complex.
- Viral DNA concatenation and deletion are late events, occurring after the DDR is suppressed and viral DNA replication has initiated.
- The findings clarify the interplay between adenovirus and the host DDR machinery, highlighting viral strategies for replication and genome maintenance.
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