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Updated: Jun 25, 2026

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales
Published on: August 21, 2019
Visualization of 3-D high speed ultrahigh resolution optical coherence tomographic data identifies structures visible
Larry Kagemann1, Hiroshi Ishikawa, Gadi Wollstein
1UPMC Eye Center, Eye and Ear Institute, Ophthalmology and Visual Science Research Center, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
This study uses 3D reconstruction and C-mode imaging to identify unknown structures seen in optical coherence tomography scans, revealing details of laminar pores, corneal nerves, and retinal capillaries.
Area of Science:
- Ophthalmology
- Medical Imaging
- Anatomy
Background:
- Optical coherence tomography (OCT) provides detailed cross-sectional views of ocular structures.
- However, the precise identity of certain objects visualized in OCT slices remains unclear.
- 3D reconstruction offers a potential method for identifying these structures.
Purpose of the Study:
- To reconstruct and identify previously unidentified structures observed in OCT images.
- To utilize C-mode imaging to visualize and characterize these structures in three dimensions.
Main Methods:
- Employed 3D reconstruction techniques on OCT data.
- Utilized C-mode imaging to trace and visualize structures within OCT slices.
- Analyzed the 3D morphology of identified structures.
Main Results:
- Identified mottling in optic disc OCT slices as laminar pores.
- Visualized and identified white spots/streaks in corneal OCT slices as radial corneal nerves.
- Identified white spots in high-resolution retinal OCT slices as blood within capillaries.
Conclusions:
- 3D reconstruction and C-mode contour-corrected imaging are effective for identifying unknown ocular structures in OCT.
- This technique clarifies the nature of previously ambiguous findings in the optic disc, cornea, and retina.
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08:50Longitudinal Morphological and Physiological Monitoring of Three-dimensional Tumor Spheroids Using Optical Coherence Tomography
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