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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
Published on: March 1, 2022
Xiaoyu Chen1, Paola Carbone, Giuseppe Santangelo
1National Laboratory of Solid State Microstructures, Nanjing University, Nanjing, 210093, PR China. chenxiaoyu.nanjing@gmail.com
This study extends polymer backmapping to nonequilibrium shear flow. A new protocol maintains global deformation during atomistic reconstruction, minimizing artifacts for accurate simulations.
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