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Pooled shRNA Screen for Reactivation of MeCP2 on the Inactive X Chromosome
Published on: March 2, 2018
A functional screen for regulators of CKDN2A reveals MEOX2 as a transcriptional activator of INK4a
Jeffrey T Irelan1, Ana Gutierrez Del Arroyo, Abel Gutierrez
1Genomics Institute of the Novartis Research Foundation, San Diego, CA, USA. jirelan@gmail.com
Abstract:
The CDKN2A locus encodes two important tumor suppressors, INK4a and ARF, which respond to oncogenic stresses by inducing cellular senescence. We conducted a genome-scale cDNA overexpression screen using a reporter containing INK4a regulatory sequences to identify novel transcriptional activators of this locus. This screen revealed 285 cDNAs that putatively regulate the transcriptional activation of INK4a. Of these, 56 are annotated as transcription factors, including two previously reported activators of the locus, ETS2 and JUNB. Fourteen genes were further validated for activity and specificity, including several homeodomain proteins. We found that the transcription of one of these, the homeodomain protein MEOX2 (GAX) is enhanced in primary cells during the induction of senescence, and forced expression of this protein results in the induction of premature senescence. We further demonstrate that MEOX2-induced senescence is dependent upon INK4a activity, and chromatin immunoprecipitation studies indicate that MEOX2 directly binds the INK4a promoter. These results support a role for this homeodomain protein as a direct regulator of INK4a transcription and senescence in human cells.
Insights
Researchers identified novel activators of the CDKN2A tumor suppressor locus, including the homeodomain protein MEOX2. MEOX2 directly regulates INK4a transcription and induces cellular senescence, revealing a new mechanism in tumor suppression.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- The CDKN2A locus produces INK4a and ARF tumor suppressors.
- These proteins induce cellular senescence in response to oncogenic stress.
Purpose of the Study:
- Identify novel transcriptional activators of the CDKN2A locus.
- Investigate the role of MEOX2 in regulating INK4a and senescence.
Main Methods:
- Genome-scale cDNA overexpression screen using an INK4a reporter.
- Validation of candidate genes, including homeodomain proteins.
- Chromatin immunoprecipitation to assess MEOX2 binding to the INK4a promoter.
Main Results:
- Identified 285 potential transcriptional activators of CDKN2A.
- Validated 14 genes, including homeodomain proteins.
- MEOX2 (GAX) expression increased during senescence and induced premature senescence.
- MEOX2 directly binds the INK4a promoter and its senescence-inducing role is INK4a-dependent.
Conclusions:
- MEOX2 is a novel, direct transcriptional activator of the INK4a locus.
- MEOX2 plays a significant role in regulating INK4a transcription and inducing cellular senescence.
- These findings offer new insights into tumor suppressor regulation and senescence pathways.
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