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Related Concept Videos

Proteomics01:33

Proteomics

A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term proteomics...

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Updated: Jun 24, 2026

TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis
07:44

TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis

Published on: June 8, 2020

A platform to standardize, store, and visualize proteomics experimental data.

Guangyong Zheng1, Hong Li, Chuan Wang

  • 1Bioinformation Center, Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.

Acta Biochimica Et Biophysica Sinica
|April 9, 2009
PubMed
Summary
This summary is machine-generated.

The Integrated Proteomics Exploring Database (IPED) manages large-scale proteomics data. This platform facilitates data exchange and analysis, offering a valuable resource for researchers in the proteomics community.

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Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools
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Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools

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Last Updated: Jun 24, 2026

TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis
07:44

TMT Sample Preparation for Proteomics Facility Submission and Subsequent Data Analysis

Published on: June 8, 2020

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools
07:01

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools

Published on: August 19, 2025

Area of Science:

  • Proteomics
  • Bioinformatics
  • Genomics

Background:

  • Large-scale proteomics studies generate vast amounts of data, posing challenges for storage, exchange, and analysis.
  • Existing data management solutions may not adequately address the complexities of proteomics experimental data.

Purpose of the Study:

  • To introduce the Integrated Proteomics Exploring Database (IPED) as a comprehensive platform for managing proteomics experimental data.
  • To provide a robust system for data storage, exchange, and analysis within the proteomics research field.

Main Methods:

  • Developed three core components: IPED client editor, IPED server software, and IPED web interface.
  • The client editor generates XML data files compliant with Proteome Experimental Data Repository (PEDRo) and General Proteomics Standard (GPS).
  • The server software parses XML data and loads it into a central database; the web interface visualizes experimental results.

Main Results:

  • IPED offers a user-friendly platform for collecting, managing, and accessing proteomics data.
  • The system ensures data compliance with established proteomics standards (PEDRo and GPS).
  • The web interface provides convenient graphical representations of experimental results, enhancing data interpretation.

Conclusions:

  • IPED serves as a powerful tool for proteomics data exchange and analysis.
  • The platform's convenience and data accessibility make it a significant resource for the proteomics community.
  • IPED is available online, promoting wider adoption and collaboration in proteomics research.