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Related Concept Videos

Export of Misfolded Proteins out of the ER01:32

Export of Misfolded Proteins out of the ER

After folding, the ER assesses the quality of secretory and membrane proteins. The correctly folded proteins are cleared by the calnexin cycle for transport to their final destination, while misfolded proteins are held back in the ER lumen. The ER chaperones attempt to unfold and refold the misfolded proteins but sometimes fail to achieve the correct native conformation. Such terminally misfolded proteins are then exported to the cytosol by ER-associated degradation or ERAD pathway for...
The Unfolded Protein Response01:37

The Unfolded Protein Response

The ER is the hub of protein synthesis in a cell. It has robust systems to quality control protein folding and also for degradation of terminally misfolded proteins. Under normal conditions, a small proportion of misfolded proteins that cannot be salvaged need to be transported to the cytoplasm by the ER-associated degradation or ERAD pathways. However, if the ERAD cannot handle the misfolded proteins, the cell activates the unfolded protein response or UPR to adjust the protein folding...
Directing Proteins to the Rough Endoplasmic Reticulum01:34

Directing Proteins to the Rough Endoplasmic Reticulum

The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
ER Retrieval Pathway01:45

ER Retrieval Pathway

In the secretory pathway, vesicles transport proteins from one cellular compartment to another in forward transport to deliver the protein to its correct location. Occasionally, misfolded proteins and incorrect proteins escape their original compartments, and a retrieval pathway is used to return the escaped proteins to their original compartment.
The ER uses many checkpoints to prevent the entry of incorrectly folded or a resident protein as cargo onto a transport vesicle. These mechanisms...
Tail-anchoring of Proteins in the ER Membrane01:45

Tail-anchoring of Proteins in the ER Membrane

Tail-anchored, or TA, proteins are estimated to make up to 3-5% of membrane proteins found in the eukaryotic cell. Such proteins have a single transmembrane domain located approximately 30 amino acid residues upstream from the C-terminal end. As a result, the signal recognition particle (SRP) cannot guide a TA protein to the ER membrane for cotranslational insertion. Hence, they are integrated into the ER membrane post-translationally using their C-terminal end as the anchor. TA proteins...
Protein Modifications in the RER01:26

Protein Modifications in the RER

Modification of secretory and transmembrane proteins entering the rough ER begins in the ER lumen. These modifications aid in protein folding and stabilize the acquired tertiary structure. Protein modifications in the rough ER co-occur at different stages of protein folding.
Broadly, these modifications can be categorized into four main categories — glycosylation, formation of disulfide bonds, assembly of protein subunits, and specific proteolytic cleavages like removal of signal sequences.

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Related Experiment Video

Updated: Jun 24, 2026

Cycloheximide Chase Analysis of Protein Degradation in Saccharomyces cerevisiae
09:05

Cycloheximide Chase Analysis of Protein Degradation in Saccharomyces cerevisiae

Published on: April 18, 2016

Adapter-mediated substrate selection for endoplasmic reticulum-associated degradation.

Kathleen Corcoran1, Xiaoli Wang, Lonnie Lybarger

  • 1Department of Immunobiology, University of Arizona, Tucson, AZ 85724, USA.

The Journal of Biological Chemistry
|April 16, 2009
PubMed
Summary

Endoplasmic reticulum-associated degradation (ERAD) utilizes adapter proteins to recruit diverse substrates for ubiquitination. This mechanism ensures specificity for ERAD E3 ligases, like mK3, independent of substrate sequence.

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Growth-based Determination and Biochemical Confirmation of Genetic Requirements for Protein Degradation in Saccharomyces cerevisiae
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Growth-based Determination and Biochemical Confirmation of Genetic Requirements for Protein Degradation in Saccharomyces cerevisiae

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Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
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Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates

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Last Updated: Jun 24, 2026

Cycloheximide Chase Analysis of Protein Degradation in Saccharomyces cerevisiae
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Published on: April 18, 2016

Growth-based Determination and Biochemical Confirmation of Genetic Requirements for Protein Degradation in Saccharomyces cerevisiae
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Growth-based Determination and Biochemical Confirmation of Genetic Requirements for Protein Degradation in Saccharomyces cerevisiae

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Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates
09:47

Evaluation of Substrate Ubiquitylation by E3 Ubiquitin-ligase in Mammalian Cell Lysates

Published on: May 10, 2022

Area of Science:

  • Cell Biology
  • Molecular Biology
  • Immunology

Background:

  • Endoplasmic reticulum-associated degradation (ERAD) involves ubiquitin ligases (E3) targeting diverse substrates.
  • Specificity in ERAD is crucial, as E3 ligases must handle varied substrates without relying solely on sequence.
  • Mechanisms ensuring E3 ligase specificity for multiple, unrelated substrates are not fully understood.

Purpose of the Study:

  • To investigate the mechanism of substrate selection for the viral ERAD E3 ligase, mK3.
  • To provide direct evidence for adapter-mediated substrate recruitment in ERAD.
  • To explore how E3 ligases achieve specificity for structurally diverse substrates.

Main Methods:

  • Utilized a viral ERAD E3 ligase (mK3) system.
  • Investigated the role of ER membrane protein complexes in substrate selection.
  • Assessed ubiquitination of heterologous substrates recruited by ER accessory molecules.

Main Results:

  • Demonstrated that ER membrane protein complexes are essential for mK3 substrate selection.
  • Showed that mK3 can ubiquitinate heterologous substrates when recruited by ER accessory proteins.
  • Identified adapter-mediated recruitment as a key specificity mechanism for mK3.

Conclusions:

  • Adapter proteins play a critical role in recruiting substrates to ERAD E3 ligases.
  • This adapter-mediated mechanism explains how E3 ligases can target multiple, sequence-unrelated substrates.
  • The findings offer insights into both viral and cellular ERAD pathways.