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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs)
Cécile Rochette-Egly1, Pierre Germain
1Institut de Génétique et de Biologie Moléculaire et Cellulaire, Department of Functional Genomics, INSERM U596, CNRS UMR7104, Université Louis Pasteur de Strasbourg, Strasbourg, France. cegly@igbmc.fr
Abstract:
Nuclear retinoic acid receptors (RARs) are transcriptional regulators controlling the expression of specific subsets of genes in a ligand-dependent manner. The basic mechanism for switching on transcription of cognate target genes involves RAR binding at specific response elements and a network of interactions with coregulatory protein complexes, the assembly of which is directed by the C-terminal ligand-binding domain of RARs. In addition to this scenario, new roles for the N-terminal domain and the ubiquitin-proteasome system recently emerged. Moreover, the functions of RARs are not limited to the regulation of cognate target genes, as they can transrepress other gene pathways. Finally, RARs are also involved in nongenomic biological activities such as the activation of translation and of kinase cascades. Here we will review these mechanisms, focusing on how kinase signaling and the proteasome pathway cooperate to influence the dynamics of RAR transcriptional activity.
Insights
Nuclear retinoic acid receptors (RARs) regulate gene expression through ligand binding and protein interactions. Emerging research highlights their roles in kinase signaling and proteasome pathways, influencing transcriptional dynamics.
Area of Science:
- Molecular Biology
- Gene Regulation
- Cell Signaling
Background:
- Nuclear retinoic acid receptors (RARs) are key transcriptional regulators.
- RARs control gene expression via ligand-dependent mechanisms involving DNA binding and coregulatory proteins.
Purpose of the Study:
- To review the diverse mechanisms of RAR transcriptional regulation.
- To focus on the interplay between kinase signaling and the ubiquitin-proteasome system in modulating RAR activity.
Main Methods:
- Literature review of established and emerging mechanisms of RAR function.
- Analysis of RAR interactions with coregulatory complexes, N-terminal domain roles, and the ubiquitin-proteasome system.
Main Results:
- RARs utilize both canonical ligand-dependent and non-genomic pathways.
- The N-terminal domain and proteasome system play significant roles in RAR regulation.
- RARs can transrepress other gene pathways and influence translation and kinase cascades.
Conclusions:
- RAR transcriptional activity is dynamically regulated by complex molecular mechanisms.
- Kinase signaling and proteasome pathways are critical in controlling RAR function and gene expression.
- Understanding these multifaceted roles is essential for comprehending RAR-mediated biological processes.
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