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Updated: Jun 22, 2026

Optogenetic Functional MRI
Published on: April 19, 2016
Simple and cost-effective hardware and software for functional brain mapping using intrinsic optical signal imaging
Thomas C Harrison1, Albrecht Sigler, Timothy H Murphy
1Kinsmen Laboratory, Department of Psychiatry, 2255 Wesbrook Mall, University of British Columbia, Vancouver, BC, Canada V6T 1Z3.
We developed a low-cost intrinsic optical signal (IOS) imaging system using LED lights and basic microscopes. This accessible method maps brain activity by measuring light reflectance changes in tissue.
Area of Science:
- Neuroscience
- Optical Imaging
- Biomedical Engineering
Background:
- Intrinsic optical signal (IOS) imaging reveals brain activity through light reflectance changes.
- Traditional IOS imaging often requires specialized and expensive equipment.
- A need exists for more accessible and cost-effective brain imaging techniques.
Purpose of the Study:
- To present a simple, low-cost system for intrinsic optical signal (IOS) imaging.
- To demonstrate the system's utility for mapping sensory representations in the brain.
- To enable IOS imaging with minimal specialized equipment.
Main Methods:
- Utilized stable LED ring lights for homogeneous illumination.
- Employed basic microscopes and commonly available CCD cameras (8-bit or 12-bit).
- Developed software for creating sensory representation maps from captured images.
- Described surgical techniques for acute and chronic mouse preparations.
Main Results:
- Achieved highly stable illumination (<0.003% fluctuation).
- Successfully mapped sensory representations using the developed system.
- Demonstrated adaptability to commercial upright microscopes and custom macroscopes.
Conclusions:
- The described IOS imaging system offers a simple and affordable approach to studying brain activity.
- This method is versatile and can be integrated with advanced imaging techniques like two-photon microscopy.
- The system lowers the barrier to entry for functional brain imaging research.
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