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Updated: May 5, 2026

Nasal Wipes for Influenza A Virus Detection and Isolation from Swine
Published on: December 4, 2015
Severe respiratory disease concurrent with the circulation of H1N1 influenza
Gerardo Chowell1, Stefano M Bertozzi, M Arantxa Colchero
1Division of Epidemiology and Population Studies, Fogarty International Center, National Institutes of Health, Bethesda, MD, USA.
Background:
In the spring of 2009, an outbreak of severe pneumonia was reported in conjunction with the concurrent isolation of a novel swine-origin influenza A (H1N1) virus (S-OIV), widely known as swine flu, in Mexico. Influenza A (H1N1) subtype viruses have rarely predominated since the 1957 pandemic. The analysis of epidemic pneumonia in the absence of routine diagnostic tests can provide information about risk factors for severe disease from this virus and prospects for its control.
Methods:
From March 24 to April 29, 2009, a total of 2155 cases of severe pneumonia, involving 821 hospitalizations and 100 deaths, were reported to the Mexican Ministry of Health. During this period, of the 8817 nasopharyngeal specimens that were submitted to the National Epidemiological Reference Laboratory, 2582 were positive for S-OIV. We compared the age distribution of patients who were reported to have severe pneumonia with that during recent influenza epidemics to document an age shift in rates of death and illness.
Results:
During the study period, 87% of deaths and 71% of cases of severe pneumonia involved patients between the ages of 5 and 59 years, as compared with average rates of 17% and 32%, respectively, in that age group during the referent periods. Features of this epidemic were similar to those of past influenza pandemics in that circulation of the new influenza virus was associated with an off-season wave of disease affecting a younger population.
Conclusions:
During the early phase of this influenza pandemic, there was a sudden increase in the rate of severe pneumonia and a shift in the age distribution of patients with such illness, which was reminiscent of past pandemics and suggested relative protection for persons who were exposed to H1N1 strains during childhood before the 1957 pandemic. If resources or vaccine supplies are limited, these findings suggest a rationale for focusing prevention efforts on younger populations.
Insights
The 2009 swine flu pandemic disproportionately affected younger adults, causing severe pneumonia in those aged 5-59. This age shift suggests prior exposure may offer protection, guiding future prevention efforts.
Area of Science:
- Epidemiology
- Virology
- Public Health
Background:
- A novel swine-origin influenza A (H1N1) virus (S-OIV) caused a severe pneumonia outbreak in Mexico in 2009.
- Influenza A (H1N1) viruses had not predominated since the 1957 pandemic.
- Analyzing this epidemic provides insights into risk factors and control of severe H1N1 disease.
Purpose of the Study:
- To analyze the demographic and clinical features of the 2009 H1N1 influenza pandemic in Mexico.
- To compare the age distribution of severe pneumonia cases during the H1N1 outbreak with historical influenza epidemics.
- To identify risk factors and guide control strategies for H1N1-related severe pneumonia.
Main Methods:
- Retrospective analysis of severe pneumonia cases reported to the Mexican Ministry of Health from March 24 to April 29, 2009.
- Testing of nasopharyngeal specimens for S-OIV at the National Epidemiological Reference Laboratory.
- Comparison of the age distribution of severe pneumonia and mortality during the H1N1 epidemic with data from previous influenza seasons.
Main Results:
- During the study period, 2155 severe pneumonia cases, 821 hospitalizations, and 100 deaths were reported.
- S-OIV was detected in 2582 of 8817 submitted specimens.
- A significant shift in age distribution was observed: 87% of deaths and 71% of severe pneumonia cases occurred in individuals aged 5-59 years, contrasting with historical averages.
Conclusions:
- The 2009 H1N1 pandemic exhibited an unusual age distribution, affecting a younger population compared to typical influenza epidemics.
- This age shift suggests potential cross-protective immunity from prior exposure to H1N1 strains before 1957.
- Findings support prioritizing younger populations for H1N1 prevention efforts, especially if resources like vaccines are limited.
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