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Updated: Jun 21, 2026

High Throughput Co-culture Assays for the Investigation of Microbial Interactions
Published on: October 15, 2019
Using small molecules to dissect mechanisms of microbial pathogenesis
1Department of Chemical and Systems Biology, Stanford UniversitySchool of Medicine, 300 Pasteur Dr., Stanford, California 94305, USA.
Small molecules offer powerful tools to study pathogen invasion mechanisms when genetic methods fail. Activity-based protein profiling and high-throughput screening are key small molecule approaches for understanding pathogenesis.
Area of Science:
- Microbiology and Molecular Biology
- Infectious Disease Research
- Chemical Biology
Background:
- Pathogen invasion and host neutralization are critical areas of academic and clinical interest.
- Genetic tools for studying pathogenesis are often limited or insufficient.
- Small molecules provide precise control to modulate biological functions and target conserved pathways.
Purpose of the Study:
- To review the application of small molecule approaches in studying pathogenesis.
- To highlight the use of activity-based protein profiling and high-throughput screening in examining host-pathogen interactions.
- To discuss future expansion of these techniques in infectious disease research.
Main Methods:
- Activity-based protein profiling (ABPP) for target identification.
- High-throughput phenotypic screening (HTS) for drug discovery and mechanism elucidation.
- Utilizing small molecules to probe and modulate pathogen virulence factors and host responses.
Main Results:
- Demonstrated successful application of ABPP and HTS in understanding bacterial and parasitic pathogenesis.
- Identified specific molecular targets and pathways involved in host-pathogen interactions.
- Provided examples of how small molecules can dissect complex pathogenetic mechanisms.
Conclusions:
- Small molecule strategies, including ABPP and HTS, are valuable alternatives to genetic methods for studying pathogenesis.
- These approaches offer broad applicability across different pathogens and conserved processes.
- Future research can expand the use of small molecules to uncover novel therapeutic strategies against infectious diseases.
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