Related Experiment Video
Updated: Jun 12, 2026

12:21
Measurement of mRNA Decay Rates in Saccharomyces cerevisiae Using rpb1-1 Strains
Published on: December 13, 2014
Co-translational mRNA decay in Saccharomyces cerevisiae
Wenqian Hu1, Thomas J Sweet, Sangpen Chamnongpol
1Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, Ohio 44106, USA.
Nature
|August 25, 2009
Summary
Messenger RNA (mRNA) decay occurs while ribosomes are actively translating, challenging the idea that ribosome removal is required. This suggests mRNA degradation evolved to allow the final ribosome to complete translation.
Area of Science:
- Molecular Biology
- Gene Expression Regulation
- RNA Metabolism
Background:
- Steady-state messenger RNA (mRNA) levels are determined by transcription and decay rates.
- Transcriptional regulation is well-understood, but mRNA decay mechanisms remain largely unclear.
- In yeast, mRNA decay involves deadenylation, decapping, and 5'-3' exonuclease digestion.
Purpose of the Study:
- To investigate the role of ribosomes in the mRNA decay pathway.
- To determine if ribosome dissociation is a prerequisite for mRNA degradation.
- To elucidate the relationship between translation and mRNA decay.
Main Methods:
- Studied mRNA decay in yeast.
- Observed mRNA decay in association with actively translating ribosomes.
- Analyzed the timing of ribosome dissociation relative to mRNA degradation.
Main Results:
- mRNA decay occurs concurrently with active ribosome translation.
- Ribosome dissociation is not required before mRNA degradation commences.
- The 5'-3' polarity of mRNA degradation may ensure translation completion.
Conclusions:
- The prevailing hypothesis that ribosomes must detach before mRNA decay is incorrect.
- mRNA decay can proceed on actively translating transcripts.
- The process of mRNA degradation is linked to the completion of translation.
More Related Videos
Related Concept Videos
Nuclear Export of mRNA
Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Riboswitches
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
mRNA Stability and Gene Expression
The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
Cis-acting Elements involved in mRNA stability
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
mRNA Stability and Gene Expression
The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
Cis-acting Elements involved in mRNA stability

