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Updated: Jun 20, 2026

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Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Concordant DNA methylation in synchronous colorectal carcinomas
Kazuo Konishi1, Lanlan Shen, Jaroslav Jelinek
1Department of Leukemia, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA.
Cancer Prevention Research (Philadelphia, Pa.)
|September 10, 2009
Summary
Synchronous colorectal tumors from the same anatomical site show strong similarities in gene methylation and BRAF mutations. This suggests a patient-specific predisposition, impacting colorectal cancer risk assessment and prevention strategies.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Epigenetic alterations are implicated in colorectal carcinogenesis.
- Understanding the field defect is crucial for cancer risk assessment and prevention.
- Investigating genetic and epigenetic markers in multiple colorectal neoplasias (M-CRN) and solitary colorectal cancers (S-CRC) can elucidate tumor development patterns.
Purpose of the Study:
- To test the hypothesis that epigenetic changes mediate the field defect in colorectal carcinogenesis.
- To evaluate methylation status of eight genes and mutations in BRAF and KRAS in M-CRNs and S-CRCs.
- To assess concordance of molecular markers and histological features between synchronous colorectal tumors.
Main Methods:
- Analysis of methylation status for MINT1, MINT2, MINT31, MLH1, p16, p14, MGMT, and ESR1 genes.
- Detection of BRAF and KRAS mutations.
- Comparison of molecular and histological data between 57 M-CRNs and 69 S-CRCs.
- Assessment of methylation and mutation concordance in paired tumors from the same anatomical site.
Main Results:
- No significant difference in overall methylation between M-CRNs and S-CRCs, except for higher p14 and MGMT methylation in M-CRNs.
- Significant concordance in methylation for MINT1, p16, MLH1, and MGMT between tumors from the same site.
- BRAF mutations showed concordance in proximal pairs but discordance in different site pairs; KRAS mutations showed no concordance.
- Histological cribriform glandular configuration was concordant in 80% of paired cancers from similar locations.
Conclusions:
- Synchronous colorectal tumors from the same site exhibit high concordance in gene methylation, BRAF mutations, and histological features.
- These findings support the concept of a patient-specific predisposition to distinct colorectal cancer subtypes.
- Results have implications for refining screening and secondary prevention strategies for colon cancer.
Related Concept Videos
Epigenetic Regulation
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...
Epigenetic Regulation
Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.

