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Updated: Jun 20, 2026

Use of Viral Entry Assays and Molecular Docking Analysis for the Identification of Antiviral Candidates against Coxsackievirus A16
Published on: July 15, 2019
Ty3 nuclear entry is initiated by viruslike particle docking on GLFG nucleoporins
Nadejda Beliakova-Bethell1, Laura J Terry, Virginia Bilanchone
1Department of Biological Chemistry, University of California, Irvine, CA 92697, USA.
Abstract:
Yeast retrotransposons form intracellular particles within which replication occurs. Because fungal nuclear membranes do not break down during mitosis, similar to retroviruses infecting nondividing cells, the cDNA produced must be translocated through nuclear pore complexes. The Saccharomyces cerevisiae long terminal repeat retrotransposon Ty3 assembles its Gag3 and Gag3-Pol3 precursor polyproteins into viruslike particles in association with perinuclear P-body foci. These perinuclear clusters of Ty3 viruslike particles localized to sites of clustered nuclear pore complexes (NPCs) in a nup120Delta mutant, indicating that Ty3 particles and NPCs interact physically. The NPC channels are lined with nucleoporins (Nups) with extended FG (Phe-Gly) motif repeat domains, further classified as FG, FxFG, or GLFG repeat types. These domains mediate partitioning of proteins between the cytoplasm and the nucleus. Here we have systematically examined the requirements for FG repeat domains in Ty3 nuclear transport. The GLFG domains interacted in vitro with virus-like particle Gag3, and this interaction was disrupted by mutations in the amino-terminal domain of Gag3, which is predicted to lie on the external surface of the particles. Accordingly, Ty3 transposition was decreased in strains with the GLFG repeats deleted. The spacer-nucleocapsid domain of Gag3, which is predicted to be internal to the particle, interacted with GLFG repeats and nucleocapsid localized to the nucleus. We conclude that Ty3 particle docking on nuclear pores is facilitated by interactions between Gag3 and GLFG Nups and that nuclear entry of the preintegration complex is further promoted by nuclear localization signals within the nucleocapsid and integrase.
Insights
Yeast retrotransposons like Ty3 use nuclear pore complexes for nuclear entry. Interactions between Ty3 Gag3 proteins and GLFG nucleoporins facilitate this transport, crucial for transposition.
Area of Science:
- Molecular biology
- Cell biology
- Virology
Background:
- Yeast retrotransposons replicate within intracellular particles.
- Nuclear transport is essential for retrotransposon replication in yeast due to intact nuclear membranes during mitosis.
- Ty3 retrotransposon particles associate with perinuclear P-body foci and interact with nuclear pore complexes (NPCs).
Purpose of the Study:
- To investigate the role of FG (Phe-Gly) repeat domains in nucleoporins (Nups) for Ty3 nuclear transport.
- To identify specific interactions between Ty3 virus-like particles and Nups.
Main Methods:
- In vitro interaction assays between GLFG Nup domains and Ty3 Gag3 protein.
- Analysis of Ty3 transposition in yeast strains with deleted GLFG repeats.
- Examination of Gag3 domains and their localization within the cell.
Main Results:
- GLFG Nup domains directly interacted with Ty3 Gag3 protein in vitro.
- Mutations in the N-terminal domain of Gag3 disrupted the interaction with GLFG Nups.
- Deletion of GLFG repeats reduced Ty3 transposition efficiency.
- The spacer-nucleocapsid domain of Gag3 interacted with GLFG repeats, and nucleocapsid localized to the nucleus.
Conclusions:
- Ty3 particle docking to NPCs is mediated by Gag3 interactions with GLFG Nups.
- Nuclear entry of the preintegration complex is enhanced by nuclear localization signals in the nucleocapsid and integrase.
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