Related Experiment Video
Updated: Feb 11, 2026

Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro
Published on: September 26, 2025
H2 activation by a (PNP)Ir(C6H5) complex via the dearomatization/aromatization process of the PNP ligand: a
Guixiang Zeng1, Yong Guo, Shuhua Li
1School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing, 210093, PR China.
Abstract:
Density functional theory calculations have been carried out to explore the mechanism of the H(2) activation by the (PNP)Ir(C(6)H(5)) complex. Our calculations show that the reaction is most likely to go though three steps. The first step (also the rate-determining step) involves the proton transfer from the benzylic position of the PNP ligand to the metal center to form an Ir(III) hydride intermediate, accompanied by the dearomatization of the PNP ligand. Second, H(2) is coordinated to the metal of this Ir(III) intermediate to form a molecular hydrogen complex. Finally, the H-H bond is heterolytically cleaved to produce the final trans-dihydride product, in which the benzylic carbon is protonated, and the PNP ligand is rearomatized. Thus, the H(2) activation by the Ir(I) complex actually involves an Ir(III) hydride complex as a key intermediate. The Ir center and the PNP ligand cooperate in a synergistic manner in the H(2) activation process. The above molecular mechanism could provide reasonable explanations for known experimental facts.
Related Concept Videos
Imaging Studies III: Computed Tomography
Metal-Ligand Bonds
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
Ligand Binding and Linkage
Ligand Binding Sites
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Formation of Complex Ions
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...

