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Updated: Jun 19, 2026

Development and Application of Rapamycin-regulated Tyrosine Phosphatases
Published on: September 6, 2024
Regulation of mTOR complex 1 (mTORC1) by raptor Ser863 and multisite phosphorylation
Kathryn G Foster1, Hugo A Acosta-Jaquez, Yves Romeo
1Department of Cell and Developmental Biology, Division of Metabolism, Endocrinology, and Diabetes, University of Michigan Medical School, Ann Arbor, Michigan 48109-2200, USA.
Abstract:
The rapamycin-sensitive mTOR complex 1 (mTORC1) promotes protein synthesis, cell growth, and cell proliferation in response to growth factors and nutritional cues. To elucidate the poorly defined mechanisms underlying mTORC1 regulation, we have studied the phosphorylation of raptor, an mTOR-interacting partner. We have identified six raptor phosphorylation sites that lie in two centrally localized clusters (cluster 1, Ser(696)/Thr(706) and cluster 2, Ser(855)/Ser(859)/Ser(863)/Ser(877)) using tandem mass spectrometry and generated phosphospecific antibodies for each of these sites. Here we focus primarily although not exclusively on raptor Ser(863) phosphorylation. We report that insulin promotes mTORC1-associated phosphorylation of raptor Ser(863) via the canonical PI3K/TSC/Rheb pathway in a rapamycin-sensitive manner. mTORC1 activation by other stimuli (e.g. amino acids, epidermal growth factor/MAPK signaling, and cellular energy) also promote raptor Ser(863) phosphorylation. Rheb overexpression increases phosphorylation on raptor Ser(863) as well as on the five other identified sites (e.g. Ser(859), Ser(855), Ser(877), Ser(696), and Thr(706)). Strikingly, raptor Ser(863) phosphorylation is absolutely required for raptor Ser(859) and Ser(855) phosphorylation. These data suggest that mTORC1 activation leads to raptor multisite phosphorylation and that raptor Ser(863) phosphorylation functions as a master biochemical switch that modulates hierarchical raptor phosphorylation (e.g. on Ser(859) and Ser(855)). Importantly, mTORC1 containing phosphorylation site-defective raptor exhibits reduced in vitro kinase activity toward the substrate 4EBP1, with a multisite raptor 6A mutant more strongly defective that single-site raptor S863A. Taken together, these data suggest that complex raptor phosphorylation functions as a biochemical rheostat that modulates mTORC1 signaling in accordance with environmental cues.
Insights
The mechanistic target of rapamycin complex 1 (mTORC1) pathway regulates cell growth. This study identifies key raptor phosphorylation sites, revealing that Serine 863 phosphorylation acts as a master switch controlling mTORC1 signaling. This finding offers new insights into cellular growth regulation.
Area of Science:
- Cellular Biology
- Molecular Signaling
- Biochemistry
Background:
- The mechanistic target of rapamycin complex 1 (mTORC1) is a central regulator of protein synthesis, cell growth, and proliferation.
- mTORC1 integrates signals from growth factors and nutrients to control cellular metabolism.
- The precise mechanisms governing mTORC1 regulation, particularly raptor phosphorylation, remain incompletely understood.
Purpose of the Study:
- To identify and characterize phosphorylation sites on raptor, a key component of mTORC1.
- To investigate the role of raptor phosphorylation, specifically at Serine 863, in mTORC1 signaling.
- To elucidate how raptor phosphorylation modulates mTORC1 kinase activity.
Main Methods:
- Tandem mass spectrometry was employed to identify raptor phosphorylation sites.
- Phosphospecific antibodies were generated for the identified phosphorylation sites.
- Investigated the impact of insulin, amino acids, EGF, and Rheb overexpression on raptor phosphorylation.
- Assessed the in vitro kinase activity of mTORC1 with phosphorylation-defective raptor mutants.
Main Results:
- Six raptor phosphorylation sites were identified, clustered in two regions.
- Insulin signaling via the PI3K/TSC/Rheb pathway promotes raptor Serine 863 phosphorylation in a rapamycin-sensitive manner.
- Raptor Serine 863 phosphorylation is essential for the phosphorylation of other sites, such as Serine 859 and Serine 855.
- mTORC1 containing phosphorylation-defective raptor mutants showed reduced kinase activity toward 4E-binding protein 1 (4EBP1).
Conclusions:
- Raptor phosphorylation, particularly at Serine 863, acts as a critical regulatory switch for mTORC1 signaling.
- Hierarchical phosphorylation of raptor modulates mTORC1 activity in response to various cellular cues.
- Complex raptor phosphorylation functions as a biochemical rheostat, fine-tuning mTORC1 signaling based on environmental conditions.
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