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Microbial Leaching01:27

Microbial Leaching

Microbial leaching, also known as bioleaching, is an environmentally favorable method for extracting metals from low-grade ores using specific microorganisms. This biotechnological approach is particularly valuable for mining operations targeting copper, gold, and uranium, where traditional extraction methods may be economically or environmentally impractical.Copper Leaching and Microbial CatalysisIn copper bioleaching, crushed ore is arranged into heaps and irrigated with a dilute sulfuric...
Microbial Bioremediation of Uranium01:25

Microbial Bioremediation of Uranium

Microorganisms play a critical role in the transformation and immobilization of uranium in contaminated environments through four main pathways: bioreduction, biosorption, bioaccumulation, and biomineralization. These mechanisms reduce uranium’s toxicity and prevent its migration through groundwater systems, offering sustainable approaches for in situ bioremediation.Bioreduction of UraniumBioreduction is driven by anaerobic bacteria such as certain strains of Geobacter and Shewanella, which use...
Extraction: Advanced Methods00:56

Extraction: Advanced Methods

Metal ions can be separated from one another by complexation with organic ligands–the chelating agent– to form uncharged chelates. Here, the chelating agent must contain hydrophobic groups and behave as a weak acid, losing a proton to bind with the metal. Since most organic ligands used in this process are insoluble or undergo oxidation in the aqueous phase, the chelating agent is initially added to the organic phase and extracted into the aqueous phase. The metal-ligand complex is formed in...
Microbes and Other Elemental Cycles01:24

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Microbial activity plays a pivotal role in the biogeochemical cycling of iron and manganese, especially at the redox gradients characteristic of stratified aquatic environments. These cycles are driven by microbial transformations between oxidized and reduced forms of the metals, allowing organisms to exploit them for metabolic energy and structural purposes.Iron Cycling Across Redox GradientsIn neutral, oxygen-rich surface waters, iron is predominantly found in its oxidized, insoluble ferric...
Bioavailability: Overview01:13

Bioavailability: Overview

Bioavailability refers to the proportion of an unaltered drug that, after administration, enters the systemic circulation and can be distributed to the desired action site. Factors such as gastrointestinal (GI) absorption and liver biotransformation influence the bioavailability of a drug when it is administered orally. When a drug is administered intravenously, it enters the systemic circulation directly; by definition, its bioavailability is assumed to be 100%. The bioavailability of an...
Bioavailability: Overview01:17

Bioavailability: Overview

Bioavailability refers to the proportion of an administered drug that reaches the systemic circulation in its active, unaltered form. It is a crucial pharmacokinetic parameter that determines the effectiveness of a drug in achieving its intended therapeutic outcomes. The route of administration significantly influences bioavailability, with intravenous administration achieving 100% bioavailability as the drug directly enters the bloodstream. In contrast, oral administration often results in...

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Related Experiment Video

Updated: Jun 19, 2026

An Anaerobic Biosensor Assay for the Detection of Mercury and Cadmium
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Published on: December 17, 2018

Heavy metal bioavailability and bioaccessibility in soil.

John Richard Dean1

  • 1Biomolecular and Biomedical Research Centre, School of Applied Sciences, Northumbria University, Newcastle upon Tyne, UK.

Methods in Molecular Biology (Clifton, N.J.)
|November 3, 2009
PubMed
Summary
This summary is machine-generated.

This study evaluates methods for assessing metal bioavailability and bioaccessibility in soil, including single extractions, sequential extraction, in vitro gastrointestinal extraction (PBET), and acid digestion. Results demonstrate the suitability of these approaches for metal analysis.

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Area of Science:

  • Environmental Chemistry
  • Analytical Chemistry
  • Soil Science

Background:

  • Assessing metal bioavailability and bioaccessibility in soil is crucial for environmental risk assessment.
  • Various extraction and digestion methods exist, each with specific applications and limitations.

Purpose of the Study:

  • To review and detail diverse methods for evaluating metal bioavailability and bioaccessibility in soil.
  • To provide practical guidance on performing single extractions, sequential extractions, in vitro gastrointestinal extraction (PBET), and acid digestion protocols.
  • To present analytical details for metal quantification using ICP-MS.

Main Methods:

  • Single-extraction methods (EDTA, acetic acid, DTPA, etc.).
  • Three-stage sequential extraction protocol.
  • In vitro gastrointestinal extraction (PBET) for human health risk assessment.
  • Acid digestion protocols for pseudo-total metal content.
  • Inductively coupled plasma mass spectrometry (ICP-MS) for metal analysis.

Main Results:

  • Demonstrated suitability of single-extraction (EDTA, acetic acid) and PBET methods using certified reference materials (CRM BCR 700, CRM SRM 1570A, CRM INCT-TL-1).
  • Investigated the influence of time on intestinal fluid phase metal recovery.
  • Assessed the repeatability of PBET for soil metal recovery over three weeks.

Conclusions:

  • The described methods provide a comprehensive toolkit for assessing metal bioavailability and bioaccessibility in soils.
  • Practical experimental details and results support the application of these techniques for reliable metal analysis and risk assessment.