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Updated: Jun 18, 2026

Quantitative Analysis of Alternative Pre-mRNA Splicing in Mouse Brain Sections Using RNA In Situ Hybridization Assay
Published on: August 26, 2018
Neuronal expression of two isoforms of mouse Septin 5
Akiko Asada1, Junya Takahashi, Makoto Taniguchi
1Department of Biological Sciences, Tokyo Metropolitan University, Tokyo, Japan. a7203ki@tmu.ac.jp
Septin 5 (Sept5) has two isoforms, Sept5_v1 and Sept5_v2, with distinct expression and phosphorylation patterns in the mouse brain. These differences suggest unique functions for each Sept5 isoform.
Area of Science:
- Neuroscience
- Molecular Biology
- Genetics
Background:
- Septin 5 (Sept5) is a GTPase involved in neuronal exocytosis.
- Alternative splicing produces Sept5_v1 (long) and Sept5_v2 (short) isoforms in rats.
- Sept5_v1 is phosphorylated by Cdk5/p35 at Ser17.
Purpose of the Study:
- To investigate the expression of the Sept5_v1 isoform in mammals.
- To characterize the differential expression and phosphorylation of Sept5 isoforms in the mouse.
- To explore potential isoform-specific functions of Sept5.
Main Methods:
- Polymerase chain reaction (PCR) was used to isolate mouse Sept5_v1 cDNA.
- Northern blotting and Western blotting were employed to analyze mRNA and protein expression.
- Isoform-specific phosphorylation patterns were examined.
Main Results:
- Mouse Sept5_v1 cDNA showed high homology to rat and human sequences.
- Both Sept5 isoforms were expressed in brain and testis mRNA, but only in brain protein.
- Sept5_v1 mRNA was enriched in the cortex and hippocampus, while Sept5_v2 was widespread.
- Protein ratios varied regionally, with distinct developmental expression profiles and N-terminal phosphorylation patterns.
Conclusions:
- Mammalian Sept5 exhibits distinct isoform expression and phosphorylation patterns.
- These differences suggest specialized roles for Sept5_v1 and Sept5_v2.
- Phosphorylation-specific antibodies are valuable tools for studying Sept5 isoform functions.
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