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Updated: Jun 17, 2026

A High Resolution Method to Monitor Phosphorylation-dependent Activation of IRF3
Published on: January 24, 2016
Hepatitis C virus blocks interferon effector function by inducing protein kinase R phosphorylation
Urtzi Garaigorta1, Francis V Chisari
1Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA. ugaraig@scripps.edu
Abstract:
Hepatitis C virus (HCV) is a single-stranded RNA virus encoding a single polyprotein whose translation is driven by an internal ribosome entry site (IRES). HCV infection strongly induces antiviral interferon-stimulated gene (ISG) expression in the liver, yet it persists, suggesting that HCV can block ISG effector function. We now show that HCV infection triggers phosphorylation and activation of the RNA-dependent protein kinase PKR, which inhibits eukaryotic translation initiation factor eIF2 alpha and attenuates ISG protein expression despite normal ISG mRNA induction. ISG protein induction is restored and the antiviral effects of interferon are enhanced when PKR expression is suppressed in interferon-treated infected cells. Whereas host protein translation, including antiviral ISGs, is suppressed by activated PKR, HCV IRES-dependent translation is not. These results suggest that the ability of HCV to activate PKR may, paradoxically, be advantageous for the virus during an IFN response by preferentially suppressing the translation of ISGs.
Insights
Hepatitis C virus (HCV) activates PKR, inhibiting interferon-stimulated gene (ISG) protein production. Suppressing PKR restores ISG expression and enhances antiviral effects, revealing a viral strategy to evade immune responses.
Area of Science:
- Virology
- Immunology
- Molecular Biology
Background:
- Hepatitis C virus (HCV) infection induces antiviral interferon-stimulated genes (ISGs) but persists, indicating a mechanism to counteract host defenses.
- HCV utilizes an internal ribosome entry site (IRES) for translation of its polyprotein.
Purpose of the Study:
- To investigate how HCV evades the host's interferon-stimulated gene (ISG) antiviral response.
- To elucidate the role of RNA-dependent protein kinase (PKR) in HCV's evasion strategy.
Main Methods:
- Analyzing the effect of HCV infection on PKR activation and its impact on eukaryotic translation initiation factor eIF2 alpha phosphorylation.
- Assessing ISG mRNA and protein expression levels in HCV-infected cells with and without PKR suppression.
- Comparing host protein translation with HCV IRES-dependent translation under PKR activation.
Main Results:
- HCV infection activates PKR, leading to eIF2 alpha phosphorylation and reduced ISG protein synthesis despite normal ISG mRNA levels.
- Suppression of PKR in interferon-treated, HCV-infected cells restored ISG protein induction and enhanced interferon's antiviral efficacy.
- Activated PKR inhibited host protein translation, including ISGs, but did not affect HCV IRES-driven translation.
Conclusions:
- HCV activates PKR as a mechanism to suppress the translation of antiviral ISG proteins, thereby evading the host interferon response.
- This PKR activation paradoxically benefits HCV by selectively inhibiting host antiviral protein synthesis while allowing viral translation to proceed.
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