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Updated: Jun 17, 2026

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
Published on: April 5, 2018
SWI/SNF chromatin remodeling complex is critical for the expression of microphthalmia-associated transcription factor
Jiri Vachtenheim1, Lubica Ondrusová, Jan Borovanský
1Laboratory of Molecular Biology, University Hospital, Charles University, Prague, Czech Republic. jivach@upn.anet.cz
Abstract:
The microphthalmia-associated transcription factor (MITF) is required for melanocyte development, maintenance of the melanocyte-specific transcription, and survival of melanoma cells. MITF positively regulates expression of more than 25 genes in pigment cells. Recently, it has been demonstrated that expression of several MITF downstream targets requires the SWI/SNF chromatin remodeling complex, which contains one of the two catalytic subunits, Brm or Brg1. Here we show that the expression of MITF itself critically requires active SWI/SNF. In several Brm/Brg1-expressing melanoma cell lines, knockdown of Brg1 severely compromised MITF expression with a concomitant downregulation of MITF targets and decreased cell proliferation. Although Brm was able to substitute for Brg1 in maintaining MITF expression and melanoma cell proliferation, sequential knockdown of both Brm and Brg1 in 501mel cells abolished proliferation. In Brg1-null SK-MEL-5 melanoma cells, depletion of Brm alone was sufficient to abrogate MITF expression and cell proliferation. Chromatin immunoprecipitation confirmed the binding of Brg1 or Brm to the promoter of MITF. Together these results demonstrate the essential role of SWI/SNF for expression of MITF and suggest that SWI/SNF may be a promissing target in melanoma therapy.
Insights
The SWI/SNF chromatin remodeling complex is essential for the expression of the microphthalmia-associated transcription factor (MITF) in melanoma cells. Targeting SWI/SNF may offer a new therapeutic strategy for melanoma.
Area of Science:
- Molecular Biology
- Cancer Research
- Chromatin Remodeling
Background:
- The microphthalmia-associated transcription factor (MITF) is crucial for melanocyte development and melanoma cell survival.
- MITF regulates over 25 genes essential for pigment cells.
- The SWI/SNF chromatin remodeling complex, with subunits Brm and Brg1, is known to be required for some MITF downstream targets.
Purpose of the Study:
- To investigate the role of the SWI/SNF complex in the expression of MITF itself.
- To determine the impact of SWI/SNF subunit activity on MITF expression and melanoma cell proliferation.
- To explore SWI/SNF as a potential therapeutic target in melanoma.
Main Methods:
- Utilized knockdown experiments to deplete Brg1 and/or Brm subunits in melanoma cell lines.
- Assessed MITF expression levels via quantitative analysis.
- Monitored melanoma cell proliferation rates.
- Performed chromatin immunoprecipitation to confirm SWI/SNF subunit binding to the MITF promoter.
Main Results:
- Knockdown of Brg1 significantly reduced MITF expression, its downstream targets, and melanoma cell proliferation.
- Brm could compensate for Brg1 in maintaining MITF expression and proliferation, but simultaneous depletion of both subunits abolished proliferation.
- In Brg1-null cells, Brm depletion alone abrogated MITF expression and proliferation.
- Chromatin immunoprecipitation confirmed Brg1 or Brm binding to the MITF promoter.
Conclusions:
- The SWI/SNF chromatin remodeling complex is essential for MITF expression in melanoma.
- Both Brg1 and Brm subunits play critical roles in maintaining MITF expression and melanoma cell viability.
- SWI/SNF represents a promising therapeutic target for melanoma treatment.
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