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Updated: Jun 16, 2026

An In Vitro Protocol for Evaluating MicroRNA Levels, Functions, and Associated Target Genes in Tumor Cells
Published on: May 21, 2019
MicroRNA-145 targets YES and STAT1 in colon cancer cells
Lea H Gregersen1, Anders B Jacobsen, Lisa B Frankel
1Biotech Research and Innovation Centre and Centre for Epigenetics, University of Copenhagen, Copenhagen, Denmark.
Background:
MicroRNAs (miRNAs) have emerged as important gene regulators and are recognized as key players in tumorigenesis. miR-145 is reported to be down-regulated in several cancers, but knowledge of its targets in colon cancer remains limited.
Methodology/Principal Findings:
To investigate the role of miR-145 in colon cancer, we have employed a microarray based approach to identify miR-145 targets. Based on seed site enrichment analyses and unbiased word analyses, we found a significant enrichment of miRNA binding sites in the 3'-untranslated regions (UTRs) of transcripts down-regulated upon miRNA overexpression. Gene Ontology analysis showed an overrepresentation of genes involved in cell death, cellular growth and proliferation, cell cycle, gene expression and cancer. A number of the identified miRNA targets have previously been implicated in cancer, including YES, FSCN1, ADAM17, BIRC2, VANGL1 as well as the transcription factor STAT1. Both YES and STAT1 were verified as direct miR-145 targets.
Conclusions/Significance:
The study identifies and validates new cancer-relevant direct targets of miR-145 in colon cancer cells and hereby adds important mechanistic understanding of the tumor-suppressive functions of miR-145.
Insights
This study identifies new direct targets of microRNA-145 (miR-145) in colon cancer. These findings enhance understanding of miR-145's tumor-suppressive role in this disease.
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- MicroRNAs (miRNAs) are crucial gene regulators implicated in cancer development.
- miR-145 is frequently downregulated in various cancers, but its specific targets in colon cancer are not well-defined.
Purpose of the Study:
- To identify and validate novel direct targets of miR-145 in colon cancer.
- To elucidate the mechanistic role of miR-145 in colon tumorigenesis.
Main Methods:
- Utilized a microarray-based approach to discover miR-145 targets.
- Performed seed site enrichment and unbiased word analyses on 3'-untranslated regions (UTRs).
- Validated direct targeting of YES and STAT1 using experimental methods.
Main Results:
- Identified significant enrichment of miR-145 binding sites in downregulated transcripts.
- Gene Ontology analysis revealed overrepresentation in cancer-related pathways like cell death and proliferation.
- Confirmed YES and STAT1 as direct miR-145 targets, among other potential cancer-relevant genes.
Conclusions:
- This research identifies and validates new direct targets of miR-145 relevant to colon cancer.
- Provides crucial mechanistic insights into the tumor-suppressive functions of miR-145.
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