Related Experiment Video
Updated: Jun 16, 2026

08:39
Tracking Single Proteins in Lipid Bilayers Using Fluorescence Microscopy
Published on: December 12, 2025
Higher order structure of aquaporin-4
G P Nicchia1, A Rossi, M G Mola
1Department of General and Environmental Physiology and Centre of Excellence in Comparative Genomics CEGBA, University of Bari, I-70126 Bari, Italy.
Neuroscience
|February 16, 2010
Summary
Aquaporin-4 (AQP4) forms unique structures called Orthogonal Arrays of Particles (OAPs). New methods reveal AQP4 isoform ratios in OAPs and their link to Neuromyelitis Optica.
Area of Science:
- Biochemistry
- Cell Biology
- Membrane Protein Complexes
Background:
- Mammalian Aquaporins (AQPs) typically function as monomers or trimers.
- AQP4 uniquely forms large supramolecular structures, Orthogonal Arrays of Particles (OAPs), in the plasma membrane.
- Freeze-fracture electron microscopy (FFEM) visualizes OAPs but offers limited compositional analysis.
Purpose of the Study:
- To biochemically characterize AQP4 suprastructures (OAPs) and their isoform composition.
- To explore the relationship between AQP4 OAPs, the dystrophin glycoprotein complex, and other membrane proteins.
- To investigate the role of AQP4 OAPs as targets for Neuromyelitis Optica autoantibodies.
Main Methods:
- Two-dimensional Blue Native/SDS-PAGE (2D BN/SDS-PAGE) for biochemical isolation and analysis of AQP4 complexes.
- Analysis of AQP4 isoform ratios (M1/M23) within different sized OAPs.
- Investigation of co-purifying proteins associated with AQP4 OAPs.
Main Results:
- 2D BN/SDS-PAGE successfully isolated AQP4-OAPs, revealing distinct higher-order complexes.
- Different sized AQP4-OAPs contain varying ratios of M1 and M23 isoforms.
- AQP4 OAPs associate with the dystrophin glycoprotein complex and are implicated as targets of Neuromyelitis Optica autoantibodies.
Conclusions:
- 2D BN/SDS-PAGE is a powerful tool for analyzing AQP4 suprastructure composition and heterogeneity.
- AQP4 OAP composition varies based on isoform ratios and tissue context.
- AQP4 OAPs represent a significant target in the pathogenesis of Neuromyelitis Optica.
Related Concept Videos
Aquaporins
Aquaporins or AQPs are a family of integral membrane proteins whose primary function is to transport water, while some called aquaglyceroporins also transport glycerol. In addition, aquaporins have also been suspected to be involved in transporting volatile substances, such as carbon dioxide and ammonia, across membranes. Such AQPs that act as gas channels are often highly expressed in cells involved in the gaseous exchange, such as red blood cells, epithelial cells, and pulmonary capillaries.
Structure of Porins
Mitochondria, chloroplasts, and gram-negative bacteria have transmembrane, beta-barrel proteins called porins to mediate the free diffusion of ions and metabolites across the membrane. Mitochondrial porin precursors contain conserved amino acid sequences called beta signals at their C-terminal. Beta signals have a motif of PoXGXXHyXHy (Po-Polar, X-Any amino acid, G-Glycine, Hy-LargeHydrophobic), which are crucial for precursor recognition to initiate precursor assembly. Beta-barrel precursors...
Multi-pass Transmembrane Proteins and β-barrels
In multi-pass transmembrane proteins, the polypeptide chain crosses the membrane more than once. The transmembrane polypeptide chain either forms an α-helix or β-strand structure. α-Helix containing multi-pass transmembrane proteins are ubiquitous, whereas β-strand containing ones are mainly found in gram-negative bacteria, mitochondria, and chloroplasts.
α-Helix containing multi-pass transmembrane proteins
Multi-pass transmembrane proteins such as G-protein-linked receptors (GPCRs) and...
α-Helix containing multi-pass transmembrane proteins
Multi-pass transmembrane proteins such as G-protein-linked receptors (GPCRs) and...
Protein and Protein Structure
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme can...
A protein's shape is critical to its function. For example, an enzyme can...
Protein Organization
Overview
Protein Organization
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
The primary structure of a protein is its amino acid sequence.

