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Updated: Jun 15, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
A common single nucleotide polymorphism can exacerbate long-QT type 2 syndrome leading to sudden infant death
Eyal Nof1, Jonathan M Cordeiro, Guillermo J Pérez
1Masonic Medical Research Laboratory, Utica, NY 13501, USA.
Insights
A common gene variant combined with a mutation caused sudden infant death by accentuating HERG channel dysfunction. This finding aids in identifying infants at risk for long-QT syndrome-mediated arrhythmias.
Area of Science:
- Genetics
- Cardiology
- Molecular Biology
Background:
- Sudden arrhythmic death in infants is a significant medical challenge.
- Identifying infants at risk for sudden death is crucial.
Observation:
- A family experienced two cases of sudden infant death.
- The infants inherited a common polymorphism from the father and a stop codon mutation from the mother, both of whom were asymptomatic.
- Genetic analysis revealed a heterozygous nonsense mutation (P926AfsX14) in KCNH2 in the mother and a heterozygous polymorphism (K897T) in KCNH2 in the father.
Findings:
- The deceased infants and aborted fetus inherited both the K897T polymorphism and the P926AfsX14 mutation.
- Electrophysiological studies showed that coexpression of K897T and P926AfsX14 resulted in a greater loss of HERG channel function than either variant alone.
- The combined variants led to a significantly prolonged QTc interval (560 ms) and incessant ventricular tachycardia in the infant.
Implications:
- A common KCNH2 polymorphism (K897T) can significantly worsen the loss of function in mildly defective HERG channels.
- This interaction can lead to long-QT syndrome-mediated arrhythmias and sudden infant death.
- The findings highlight the importance of genetic screening for identifying at-risk infants and families.
Background:
Identification of infants at risk for sudden arrhythmic death remains one of the leading challenges of modern medicine. We present a family in which a common polymorphism (single nucleotide polymorphism) inherited from the father, combined with a stop codon mutation inherited from the mother (both asymptomatic), led to 2 cases of sudden infant death.
Methods And Results:
KCNQ1, KCNH2, SCN5A, KCNE1, KCNE2, CACNA1c, CACNB2b, and KCNJ2 genes were amplified and analyzed by direct sequencing. Functional electrophysiological studies were performed with the single nucleotide polymorphism and mutation expressed singly and in combination in Chinese ovary (CHO-K1) and COS-1 cells. An asymptomatic woman presenting after the death of her 2-day-old infant and spontaneous abortion of a second baby in the first trimester was referred for genetic analysis. The newborn infant had nearly incessant ventricular tachycardia while in utero and a prolonged QTc (560 ms). The mother was asymptomatic but displayed a prolonged QTc. Genetic screening of the mother revealed a heterozygous nonsense mutation (P926AfsX14) in KCNH2, predicting a stop codon. The father was asymptomatic with a normal QTc but had a heterozygous polymorphism (K897T) in KCNH2. The baby who died at 2 days of age and the aborted fetus inherited both K897T and P926AfsX14. Heterologous coexpression of K897T and P926AfsX14 led to loss of function of HERG current much greater than expression of K897T or P926AfsX14 alone.
Conclusions:
Our data suggest that a common polymorphism (K897T) can markedly accentuate the loss of function of mildly defective HERG channels, leading to long-QT syndrome-mediated arrhythmias and sudden infant death.
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