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Related Experiment Video

Updated: Jun 15, 2026

Single-Molecule Dwell-Time Analysis of Restriction Endonuclease-Mediated DNA Cleavage
09:53

Single-Molecule Dwell-Time Analysis of Restriction Endonuclease-Mediated DNA Cleavage

Published on: February 7, 2021

Single-molecule studies of RecBCD.

Thomas T Perkins1, Hung-Wen Li

  • 1MCD Biology, JILA, NIST & CU, University of Colorado at Boulder, Boulder, CO, USA.

Methods in Molecular Biology (Clifton, N.J.)
|March 13, 2010
PubMed
Summary
This summary is machine-generated.

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The RecBCD enzyme

Area of Science:

  • Molecular biology
  • Biophysics

Background:

  • RecBCD is a molecular motor essential for DNA repair.
  • Understanding its DNA translocation is key to its function.

Purpose of the Study:

  • To characterize the translocation properties of RecBCD using high-resolution single-molecule techniques.
  • To investigate the motor activity and catalytic rate of RecBCD.

Main Methods:

  • Developed a high-spatial resolution optical-trapping assay for RecBCD.
  • Anchored RecBCD to a surface via genetically engineered biotin.
  • Measured DNA translocation and characterized motor properties.

Main Results:

  • RecBCD exhibits continuous motion with a step size below 6 base pairs.

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Last Updated: Jun 15, 2026

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  • Observed abrupt and sustained changes in the enzyme's catalytic rate.
  • Validated RecBCD activity using biochemical and tethered particle motion assays.
  • Conclusions:

    • The developed optical-trapping assay provides high-resolution insights into RecBCD motor activity.
    • RecBCD displays complex translocation dynamics, including persistent changes in catalytic rate.
    • Further studies can elucidate the mechanisms behind these observed dynamic behaviors.