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Published on: March 2, 2014
Immunity of replicating Mu to self-integration: a novel mechanism employing MuB protein
Jun Ge1, Zheng Lou, Rasika M Harshey
1Section of Molecular Genetics and Microbiology and Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA. rasika@uts.cc.utexas.edu.
Abstract:
We describe a new immunity mechanism that protects actively replicating/transposing Mu from self-integration. We show that this mechanism is distinct from the established cis-immunity mechanism, which operates by removal of MuB protein from DNA adjacent to Mu ends. MuB normally promotes integration into DNA to which it is bound, hence its removal prevents use of this DNA as target. Contrary to what might be expected from a cis-immunity mechanism, strong binding of MuB was observed throughout the Mu genome. We also show that the cis-immunity mechanism is apparently functional outside Mu ends, but that the level of protection offered by this mechanism is insufficient to explain the protection seen inside Mu. Thus, both strong binding of MuB inside and poor immunity outside Mu testify to a mechanism of immunity distinct from cis-immunity, which we call 'Mu genome immunity'. MuB has the potential to coat the Mu genome and prevent auto-integration as previously observed in vitro on synthetic A/T-only DNA, where strong MuB binding occluded the entire bound region from Mu insertions. The existence of two rival immunity mechanisms within and outside the Mu genome, both employing MuB, suggests that the replicating Mu genome must be segregated into an independent chromosomal domain. We propose a model for how formation of a 'Mu domain' may be aided by specific Mu sequences and nucleoid-associated proteins, promoting polymerization of MuB on the genome to form a barrier against self-integration.
Insights
A new 'Mu genome immunity' mechanism prevents Mu transposons from integrating into themselves. This distinct process, involving MuB protein binding throughout the Mu genome, complements cis-immunity and ensures genome stability.
Area of Science:
- Genetics
- Molecular Biology
- Microbiology
Background:
- Transposable elements like bacteriophage Mu require mechanisms to prevent self-integration.
- Cis-immunity, involving MuB protein removal from adjacent DNA, is an established protective mechanism.
- The precise mechanisms preventing Mu's replication and transposition from targeting its own genome remain incompletely understood.
Purpose of the Study:
- To identify and characterize novel immunity mechanisms protecting the Mu genome from self-integration.
- To differentiate this new mechanism from the known cis-immunity pathway.
- To elucidate the role of the MuB protein in Mu genome protection.
Main Methods:
- Investigated MuB protein binding patterns within and outside the Mu genome.
- Assessed the functionality and protective capacity of cis-immunity outside Mu ends.
- Compared the protective efficacy of cis-immunity versus the newly identified mechanism.
Main Results:
- A novel 'Mu genome immunity' mechanism was identified, distinct from cis-immunity.
- MuB protein exhibits strong binding throughout the Mu genome, preventing self-integration.
- Cis-immunity is functional outside Mu ends but provides insufficient protection compared to Mu genome immunity.
Conclusions:
- The Mu genome employs at least two distinct immunity mechanisms: cis-immunity and Mu genome immunity.
- Mu genome immunity, mediated by MuB polymerization on the Mu genome, is crucial for preventing auto-integration.
- The existence of these mechanisms suggests the formation of a segregated 'Mu domain' to maintain genome integrity.
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