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Updated: Jun 14, 2026

Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
Gastric cancer cell line Hs746T harbors a splice site mutation of c-Met causing juxtamembrane domain deletion
Yoshinari Asaoka1, Motohisa Tada, Tsuneo Ikenoue
1Department of Gastroenterology, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8655, Japan. yasa-tky@umin.ac.jp
Abstract:
Receptor tyrosine kinases (RTKs) are involved in oncogenesis and disease progression for many cancers. Inhibitors targeting them are vigorously developed and some of them are tested in the clinical setting. Amplifications of certain RTKs (c-Met, FGFR2 and ErbB2) have been associated with human gastric cancer progression. According to our genome-wide scans of genetic lesions in 34 gastric cancer cell lines using high-density single-nucleotide polymorphism genotyping microarrays, we confirmed that the c-met locus was amplified in four gastric cancer cell lines (Hs746T, MKN45, NUGC4 and SNU5). It was reported that somatic mutation is occasionally detected in tumor samples of a certain type of cancer with gene amplification. Previous reports showed gastric cancers harbored mutations of FGFR2 and ErbB2, but c-Met oncogenic mutation had not yet been reported. We performed mutational analysis of the cytoplasmic domains of c-Met using the genome DNA of the gastric cancer cell lines, and found that Hs746T cells had a splice site mutation of exon 14. By cDNA sequencing and Western blotting, we showed that the mutation caused juxtamembrane domain deletion. Previously, this mutation had been detected only in lung cancer specimens and this deletion resulted in the loss of Cbl E3-ligase binding causing decreased ubiquitination and delayed down-regulation. In conclusion, four gastric cancer cell lines harbored amplification of c-met locus, and among them, Hs746T had a putative oncogenic mutation with amplification. This information will be useful for screening of inhibitors targeting gastric cancer with c-Met aberration.
Insights
This study identified c-Met amplification in gastric cancer cell lines. A novel splice site mutation in Hs746T cells caused a juxtamembrane domain deletion, potentially driving cancer progression and offering therapeutic targets.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Receptor tyrosine kinases (RTKs) play a crucial role in oncogenesis and cancer progression.
- Specific RTKs like c-Met, FGFR2, and ErbB2 are implicated in gastric cancer.
- Targeted inhibitors for RTKs are under development for cancer therapy.
Purpose of the Study:
- To investigate genetic alterations, specifically amplifications and mutations, of RTKs in human gastric cancer cell lines.
- To identify novel oncogenic mutations in c-Met within gastric cancer.
- To provide insights for developing targeted therapies for gastric cancer with c-Met aberrations.
Main Methods:
- Genome-wide scans using high-density single-nucleotide polymorphism genotyping microarrays in 34 gastric cancer cell lines.
- Mutational analysis of the cytoplasmic domains of c-Met using genomic DNA.
- cDNA sequencing and Western blotting to confirm mutation effects.
Main Results:
- Confirmed amplification of the c-met locus in four gastric cancer cell lines (Hs746T, MKN45, NUGC4, SNU5).
- Discovered a splice site mutation in exon 14 of c-Met in Hs746T cells, leading to juxtamembrane domain deletion.
- Demonstrated that this deletion, previously seen only in lung cancer, impairs Cbl E3-ligase binding, reducing ubiquitination and delaying protein down-regulation.
Conclusions:
- Four gastric cancer cell lines exhibit c-met locus amplification.
- Hs746T cells possess both c-Met amplification and a putative oncogenic mutation, suggesting a dual mechanism for cancer development.
- Findings are valuable for identifying patients who may benefit from c-Met-targeted inhibitors.
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