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Updated: Jun 13, 2026

Sequence-specific Labeling of Nucleic Acids and Proteins with Methyltransferases and Cofactor Analogues
Published on: November 22, 2014
MidA is a putative methyltransferase that is required for mitochondrial complex I function
Sergio Carilla-Latorre1, M Esther Gallardo, Sarah J Annesley
1Instituto de Investigaciones Biomédicas Alberto Sols (CSIC-UAM), Arturo Duperier 4, 28029 Madrid, Spain.
Abstract:
Dictyostelium and human MidA are homologous proteins that belong to a family of proteins of unknown function called DUF185. Using yeast two-hybrid screening and pull-down experiments, we showed that both proteins interact with the mitochondrial complex I subunit NDUFS2. Consistent with this, Dictyostelium cells lacking MidA showed a specific defect in complex I activity, and knockdown of human MidA in HEK293T cells resulted in reduced levels of assembled complex I. These results indicate a role for MidA in complex I assembly or stability. A structural bioinformatics analysis suggested the presence of a methyltransferase domain; this was further supported by site-directed mutagenesis of specific residues from the putative catalytic site. Interestingly, this complex I deficiency in a Dictyostelium midA(-) mutant causes a complex phenotypic outcome, which includes phototaxis and thermotaxis defects. We found that these aspects of the phenotype are mediated by a chronic activation of AMPK, revealing a possible role of AMPK signaling in complex I cytopathology.
Insights
Dictyostelium and human MidA proteins are crucial for mitochondrial complex I assembly and stability. Loss of MidA impairs complex I, leading to cellular defects mediated by AMPK signaling.
Area of Science:
- Mitochondrial biology
- Cellular signaling
- Protein biochemistry
Background:
- Dictyostelium and human MidA proteins belong to the DUF185 family with unknown function.
- Mitochondrial complex I is essential for cellular respiration.
Purpose of the Study:
- To investigate the function of MidA proteins.
- To determine the role of MidA in mitochondrial complex I.
- To understand the phenotypic consequences of MidA deficiency.
Main Methods:
- Yeast two-hybrid screening and pull-down assays to identify protein interactions.
- Biochemical assays to measure complex I activity.
- Cellular studies (knockdown, gene deletion) in HEK293T cells and Dictyostelium.
- Structural bioinformatics and site-directed mutagenesis to analyze protein domains.
- Analysis of cellular phenotypes including phototaxis and thermotaxis.
Main Results:
- MidA interacts with the mitochondrial complex I subunit NDUFS2.
- Loss or knockdown of MidA leads to reduced complex I activity and assembly.
- MidA possesses a methyltransferase domain essential for its function.
- MidA deficiency in Dictyostelium causes phototaxis and thermotaxis defects.
- These defects are linked to chronic activation of AMP-activated protein kinase (AMPK).
Conclusions:
- MidA plays a vital role in the assembly or stability of mitochondrial complex I.
- MidA's function is linked to its methyltransferase activity.
- MidA deficiency impacts cellular behaviors through AMPK signaling pathways, highlighting a role for AMPK in complex I cytopathology.
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