LSD1-mediated demethylation of histone H3 lysine 4 triggers Myc-induced transcription

S Amente1, A Bertoni, A Morano

  • 1Department of Structural and Functional Biology, University of Naples 'Federico II', Naples, Italy.

Oncogene
|April 27, 2010
PubMed

Insights

Myc transcription factor recruits LSD1 to chromatin, causing DNA oxidation and recruiting repair enzymes. This process is crucial for activating Myc-target genes in cancer progression.

Area of Science:

  • Molecular Biology
  • Epigenetics
  • Cancer Research

Background:

  • Myc is a key transcription factor driving cancer progression.
  • Myc binds to E-box DNA sequences (CACGTG) to regulate gene expression.

Purpose of the Study:

  • To elucidate the molecular mechanisms by which Myc regulates gene transcription.
  • To investigate the role of LSD1 in Myc-mediated gene activation.

Main Methods:

  • Chromatin immunoprecipitation assays to detect protein-DNA interactions.
  • Biochemical assays to measure demethylation and oxidation.
  • Gene silencing and pharmacological inhibition to assess functional roles.

Main Results:

  • Myc recruits LSD1 to E-box chromatin, initiating transient H3K4 demethylation.
  • LSD1-mediated demethylation produces H2O2, causing guanine oxidation.
  • Oxidized guanine recruits OGG1 and Ape1, facilitating transcription initiation complex formation.
  • Inhibiting oxidation or silencing LSD1, OGG1, or Ape1 reduces Myc-target gene expression.

Conclusions:

  • Transient H3K4 demethylation by LSD1, coupled with local DNA oxidation, is essential for Myc-induced transcription.
  • This pathway highlights a novel mechanism linking epigenetic modification to DNA damage response in gene regulation.

Related Concept Videos

Histone Modification02:32

Histone Modification

The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Histone Modification02:32

Histone Modification

The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Induced Pluripotent Stem Cells01:06

Induced Pluripotent Stem Cells

Stem cells are undifferentiated cells that divide and produce different cell types. Ordinarily, cells that have differentiated into a specific cell type are terminally differentiated; however, scientists have found a way to reprogram these mature cells so that they dedifferentiate and return to an unspecialized, proliferative state. These cells are pluripotent like embryonic stem cells—able to produce all cell types—and are called induced pluripotent stem cells (iPSCs).
Somatic cells are...
Master Transcription Regulators02:23

Master Transcription Regulators

Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...