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Updated: Jun 13, 2026

Mapping Mammalian 3D Genome Interactions with Micro-C-XL

Mapping Mammalian 3D Genome Interactions with Micro-C-XL

Published on: November 3, 2023

MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection

Huabin Hou¹, Fangqing Zhao, Linglin Zhou

¹Institute of Genomic Medicine, Wenzhou Medical College, Wenzhou 325035, China.

Nucleic Acids Research

|May 7, 2010

Summary

This summary is machine-generated.

MagicViewer software visualizes next-generation sequencing data, aiding genetic variation identification and annotation. This tool simplifies analyzing large datasets for genome re-sequencing and transcriptome studies.

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Targeted DNA Methylation Analysis by Next-generation Sequencing

Targeted DNA Methylation Analysis by Next-generation Sequencing

Published on: February 24, 2015

Area of Science:

Bioinformatics
Genomics
Computational Biology

Background:

Rapid advancements in next-generation sequencing (NGS) technologies generate vast amounts of data.
Efficient tools are crucial for analyzing and interpreting large-scale sequencing datasets.

Purpose of the Study:

To develop an integrated software, MagicViewer, for visualizing short read mapping.
To enable easy identification and annotation of genetic variations using reference genomes.

Main Methods:

MagicViewer offers a user-friendly, zoomable interface for displaying large-scale short reads.
It incorporates a computational pipeline for genetic variation detection, filtration, annotation, and visualization.

Main Results:

The software provides an operating system-independent environment with user-defined color schemes.
Includes functionalities for search options, functional classification, subset selection, sequence association, and primer design.

Conclusions:

MagicViewer is a comprehensive tool for assembly visualization and genetic variation annotation of NGS data.
It is applicable to diverse sequencing research, including genome re-sequencing and transcriptome studies.