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Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 19, 2019
Elevated NCOR1 disrupts PPARalpha/gamma signaling in prostate cancer and forms a targetable epigenetic lesion
Sebastiano Battaglia1, Orla Maguire, James L Thorne
1Institute of Biomedical Research, Wolfson Drive, University of Birmingham Medical School, Edgbaston, B15 2TT, UK.
Abstract:
The loss of anti-proliferative responsiveness in prostate cancer cell lines toward ligands for vitamin D receptor, retinoic acid receptors/retinoid X receptors and peroxisome proliferator activated receptor (PPAR)alpha/gamma may entail underlying epigenetic events, as ligand insensitivity reflects significantly altered messenger RNA expression of corepressors and histone-modifying enzymes. Expression patterns were dependent on phases of the cell cycle and associated with repressed basal gene expression of vitamin D receptor and PPARalpha/gamma target genes, for example CDKN1A [encodes p21((waf1/cip1))]. Elevated nuclear corepressor 1 (NCOR1) and nuclear corepressor 2/silencing mediator of retinoic acid and thyroid hormone receptor protein levels were detected in prostate cancer cell lines compared with non-malignant counterparts. Knockdown of the corepressor NCOR1 significantly elevated basal expression of a cohort of target genes, including CDKN1A. Both chemical [histone deacetylases inhibitor (HDACi)] and NCOR1 knockdown targeting enhanced anti-proliferative sensitivity toward PPARalpha/gamma ligands in prostate cancer cell lines. Pursuing PPARalpha/gamma signaling, microarray approaches were undertaken to identify pathways and genes regulated uniquely by a combination of PPARalpha/gamma activation and HDAC inhibition. Again, HDACi and knockdown approaches demonstrated that elevated NCOR1 expression and activity distorted PPARalpha/gamma gene targets centered on, for example cell cycle control, including CDKN1A and TGFBRAP1. Quantitative real time polymerase chain reaction validation and chromatin immunoprecipitation assays both confirmed that elevated NCOR1 disrupted the ability of PPARalpha/gamma to regulate key target genes (CDKN1A and TGFBRAP1). Interrogation of these relationships in prostate cancer samples using principal component and partial correlation analyses established significant interdependent relationships between NCOR1-PPARalpha/gamma and representative target genes, independently of androgen receptor expression. Therefore, we conclude that elevated NCOR1 distorts the actions of PPARalpha/gamma selectively and generates a potential epigenetic lesion with diagnostic and prognostic significance.
Insights
Elevated nuclear corepressor 1 (NCOR1) disrupts peroxisome proliferator-activated receptor (PPAR) signaling in prostate cancer, leading to epigenetic changes. This finding offers potential diagnostic and prognostic significance for cancer patients.
Area of Science:
- Molecular Biology
- Epigenetics
- Cancer Research
Background:
- Prostate cancer cell lines exhibit reduced responsiveness to ligands for vitamin D receptor, retinoic acid receptors/retinoid X receptors, and peroxisome proliferator activated receptor (PPAR)alpha/gamma.
- This insensitivity is linked to altered messenger RNA expression of corepressors and histone-modifying enzymes, suggesting epigenetic mechanisms.
- Elevated levels of nuclear corepressor 1 (NCOR1) and nuclear corepressor 2 were observed in prostate cancer cell lines compared to non-malignant cells.
Purpose of the Study:
- To investigate the role of epigenetic events, specifically corepressor involvement, in the loss of anti-proliferative responsiveness in prostate cancer.
- To elucidate the mechanism by which elevated NCOR1 impacts PPARalpha/gamma signaling and target gene regulation.
- To explore the potential of NCOR1-PPARalpha/gamma interactions as diagnostic and prognostic markers in prostate cancer.
Main Methods:
- Messenger RNA expression analysis of corepressors and histone-modifying enzymes.
- Knockdown of NCOR1 to assess its effect on target gene expression and anti-proliferative sensitivity.
- Combination treatment with histone deacetylases inhibitor (HDACi) and PPARalpha/gamma ligands.
- Microarray analysis to identify genes regulated by PPARalpha/gamma activation and HDAC inhibition.
- Quantitative real-time polymerase chain reaction and chromatin immunoprecipitation assays.
- Principal component and partial correlation analyses in prostate cancer samples.
Main Results:
- Knockdown of NCOR1 significantly increased basal expression of target genes, including CDKN1A.
- Both HDAC inhibition and NCOR1 knockdown enhanced anti-proliferative sensitivity to PPARalpha/gamma ligands.
- Elevated NCOR1 distorted PPARalpha/gamma target genes involved in cell cycle control (e.g., CDKN1A, TGFBRAP1).
- Quantitative real-time polymerase chain reaction and chromatin immunoprecipitation confirmed NCOR1's disruption of PPARalpha/gamma regulation.
- Prostate cancer samples showed significant interdependent relationships between NCOR1, PPARalpha/gamma, and target genes.
Conclusions:
- Elevated NCOR1 selectively distorts the actions of PPARalpha/gamma in prostate cancer.
- This distortion represents a potential epigenetic lesion with diagnostic and prognostic significance.
- Targeting NCOR1 or HDACs may restore sensitivity to PPARalpha/gamma ligands, offering therapeutic potential.
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