Dark matter transcripts: sound and fury, signifying nothing?

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...

Sound waves, which are longitudinal waves, can be modeled as the displacement amplitude varying as a function of the spatial and temporal coordinates. As a column of the medium is displaced, its successive columns are also displaced. As the successive displacements differ relatively, a pressure difference with the surrounding pressure is created. The gauge pressure varies across the medium.
The pressure fluctuation depends on the difference in displacements between the successive points in the...

Sound waves can be thought of as fluctuations in the pressure of a medium through which they propagate. Since the pressure also makes the medium's particles vibrate along its direction of motion, the waves can be modeled as the displacement of the medium's particles from their mean position.
Sound waves are longitudinal in most fluids because fluids cannot sustain any lateral pressure. In solids, however, shear forces help in propagating the disturbance in the lateral direction as well. Hence,...

The human ear is not equally sensitive to all frequencies in the audible range. It may perceive sound waves with the same pressure but different frequencies as having different loudness. Moreover, the perception of sound waves depends on the health of an individual's ears, which decays with age. The health of one's ears may also be affected by regular exposure to loud noises.
The pitch of a sound depends on the frequency and the pressure amplitude of the source. Two sounds of the same frequency...

The intensity of sound waves can be related to displacement and pressure amplitudes by using their wave expressions and the definition of intensity. The critical step to achieve this is to write the power delivered by the particles on the wave as the product of force and velocity and simplify the force per unit area as the pressure. The velocity of the medium's particles can be derived from the displacement.
Unlike the time average of a sinusoidal term, which is zero since it is positive and...