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Updated: Jun 12, 2026

Microfluidic Picoliter Bioreactor for Microbial Single-cell Analysis: Fabrication, System Setup, and Operation
Published on: December 6, 2013
Microfluidic biolector-microfluidic bioprocess control in microtiter plates
Matthias Funke1, Andreas Buchenauer, Uwe Schnakenberg
1AVT Biochemical Engineering, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany.
Researchers developed a novel microfermentation system for high-throughput, controlled cell cultivation. This system enables precise pH and substrate control in small volumes, overcoming scale-up challenges in biotechnology.
Area of Science:
- Biotechnology
- Bioprocess Engineering
- Microfluidics
Background:
- Industrial-scale cell cultivation relies on controlled pH and fed-batch strategies.
- Small-scale cultivations typically use simple batch methods without process control.
- This discrepancy hinders scale-up and scale-down due to altered microbial metabolism and kinetics.
Purpose of the Study:
- To introduce a novel microfermentation system for high-throughput, controlled small-scale cultivations.
- To address the limitations of current small-scale batch experiments.
- To enable precise process control in microscale fermentation.
Main Methods:
- Integration of a fiber-optic online-monitoring device (BioLector technology) with microfluidic chips.
- Implementation of a micropump for controlled substrate feeding (fed-batch) in volumes below 1 mL.
- Application in fermentations of Escherichia coli under pH-controlled and fed-batch conditions in shaken microtiter plates (MTPs).
Main Results:
- A user-friendly microfermentation system providing high information output on a microscale.
- Demonstration of parallelized and automated experiments using MTPs.
- Successful application in controlled Escherichia coli fermentations.
Conclusions:
- The novel microfermentation system offers a simple, high-throughput solution for controlled small-scale cultivations.
- It bridges the gap between small-scale batch experiments and industrial-scale processes.
- The system is easily transferable to disposable single-use applications.
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