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Related Concept Videos

Fixing Double-strand Breaks02:04

Fixing Double-strand Breaks

The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
Fixing Double-strand Breaks02:04

Fixing Double-strand Breaks

The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
Homologous Recombination02:31

Homologous Recombination

The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Single-Strand DNA Binding Proteins01:03

Single-Strand DNA Binding Proteins

For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
Hepatitis01:25

Hepatitis

Hepatitis is an inflammatory condition of the liver most commonly caused by hepatotropic viruses (A–E), though non-infectious causes such as alcohol and drugs also exist.Hepatitis AHepatitis A virus (HAV) is a non-enveloped RNA virus of the Picornaviridae family. It is primarily transmitted via the fecal-oral route, typically through ingestion of contaminated food or water. After ingestion, HAV enters the bloodstream through the oropharynx or intestinal epithelium and reaches the liver. The...
Base-pairing and DNA Repair02:27

Base-pairing and DNA Repair

Erwin Chargaff’s rules on DNA equivalence paved the way for the discovery of base pairing in DNA. Chargaff’s rules state that in a double-stranded DNA molecule,

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Related Experiment Video

Updated: Jun 12, 2026

Detection of Low Copy Number Integrated Viral DNA Formed by In Vitro Hepatitis B Infection
11:14

Detection of Low Copy Number Integrated Viral DNA Formed by In Vitro Hepatitis B Infection

Published on: November 7, 2018

DNA double-strand breaks, potential targets for HBV integration.

Xiaowen Hu1, Jusheng Lin, Qionghui Xie

  • 1Institute of Liver Disease, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430030, China. xiaowh503@163.com

Journal of Huazhong University of Science and Technology. Medical Sciences = Hua Zhong Ke Ji Da Xue Xue Bao. Yi Xue Ying De Wen Ban = Huazhong Keji Daxue Xuebao. Yixue Yingdewen Ban
|June 18, 2010
PubMed
Summary

Hepatitis B virus (HBV) DNA integrates into double-strand breaks (DSBs), a critical DNA damage type. This integration at DSBs may drive hepatocellular carcinoma (HCC) development.

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Using Next Generation Sequencing to Identify Mutations Associated with Repair of a CAS9-induced Double Strand Break Near the CD4 Promoter

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Last Updated: Jun 12, 2026

Detection of Low Copy Number Integrated Viral DNA Formed by In Vitro Hepatitis B Infection
11:14

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Published on: November 7, 2018

Identifying Inhibitors of the HBx-DDB1 Interaction Using a Split Luciferase Assay System
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Using Next Generation Sequencing to Identify Mutations Associated with Repair of a CAS9-induced Double Strand Break Near the CD4 Promoter
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Using Next Generation Sequencing to Identify Mutations Associated with Repair of a CAS9-induced Double Strand Break Near the CD4 Promoter

Published on: March 31, 2022

Area of Science:

  • Hepatology
  • Molecular Biology
  • Oncology

Background:

  • Hepatocellular carcinoma (HCC) is a major cancer often induced by Hepatitis B virus (HBV).
  • Hepadnaviral DNA integration is a key factor in hepatocarcinogenesis.
  • The precise mechanisms of HBV DNA integration remain under investigation.

Purpose of the Study:

  • To investigate if HBV DNA integrates at sites of DNA double-strand breaks (DSBs).
  • To explore the role of DSBs as potential targets for HBV DNA insertion.

Main Methods:

  • HepG2 cells were engineered with an I-SceI recognition site.
  • Cells were exposed to patient serum with high HBV DNA loads and I-SceI expression to induce DSBs.
  • Nested PCR was employed to detect viral DNA at break sites.

Main Results:

  • HBV DNA integration was detected at I-SceI-induced DSBs.
  • Integration occurred between HBV DNA and the targeted genomic breaks.
  • This demonstrates that DSBs can serve as integration sites for HBV DNA.

Conclusions:

  • DNA double-strand breaks are potential targets for hepadnaviral DNA insertion.
  • HBV DNA integration at DSBs may lead to significant host genome alterations.
  • This finding offers a new avenue for studying viral integration in hepatocarcinogenesis.