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Updated: May 12, 2026

Analysis of Cell Cycle Position in Mammalian Cells
Published on: January 21, 2012
Tandem E2F binding sites in the promoter of the p107 cell cycle regulator control p107 expression and its cellular
Deborah L Burkhart1, Stacey E Wirt, Anne-Flore Zmoos
1Departments of Pediatrics and Genetics, Stanford Medical School, Stanford, California, United States of America.
Abstract:
The retinoblastoma tumor suppressor (Rb) is a potent and ubiquitously expressed cell cycle regulator, but patients with a germline Rb mutation develop a very specific tumor spectrum. This surprising observation raises the possibility that mechanisms that compensate for loss of Rb function are present or activated in many cell types. In particular, p107, a protein related to Rb, has been shown to functionally overlap for loss of Rb in several cellular contexts. To investigate the mechanisms underlying this functional redundancy between Rb and p107 in vivo, we used gene targeting in embryonic stem cells to engineer point mutations in two consensus E2F binding sites in the endogenous p107 promoter. Analysis of normal and mutant cells by gene expression and chromatin immunoprecipitation assays showed that members of the Rb and E2F families directly bound these two sites. Furthermore, we found that these two E2F sites controlled both the repression of p107 in quiescent cells and also its activation in cycling cells, as well as in Rb mutant cells. Cell cycle assays further indicated that activation of p107 transcription during S phase through the two E2F binding sites was critical for controlled cell cycle progression, uncovering a specific role for p107 to slow proliferation in mammalian cells. Direct transcriptional repression of p107 by Rb and E2F family members provides a molecular mechanism for a critical negative feedback loop during cell cycle progression and tumorigenesis. These experiments also suggest novel therapeutic strategies to increase the p107 levels in tumor cells.
Insights
The retinoblastoma tumor suppressor (Rb) and p107 proteins regulate cell cycle progression. This study reveals how Rb and E2F family members control p107 transcription, impacting cell proliferation and tumor development.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- The retinoblastoma tumor suppressor (Rb) protein is a key regulator of the cell cycle.
- Germline Rb mutations lead to specific tumor types, suggesting compensatory mechanisms.
- The related protein p107 exhibits functional overlap with Rb in certain cellular contexts.
Purpose of the Study:
- To investigate the in vivo functional redundancy between Rb and p107.
- To elucidate the transcriptional regulation of p107 by Rb and E2F family members.
- To uncover the role of p107 in cell cycle control and tumorigenesis.
Main Methods:
- Gene targeting in embryonic stem cells to mutate p107 promoter E2F binding sites.
- Gene expression and chromatin immunoprecipitation assays.
- Cell cycle progression assays.
Main Results:
- Rb and E2F family members directly bind to two critical sites in the p107 promoter.
- These sites regulate p107 repression in quiescent cells and activation in cycling/Rb-mutant cells.
- p107 activation via these sites during S phase is crucial for controlled cell cycle progression, slowing proliferation.
Conclusions:
- Direct transcriptional repression of p107 by Rb and E2F provides a negative feedback loop in cell cycle control and tumorigenesis.
- This identifies a specific role for p107 in limiting mammalian cell proliferation.
- Findings suggest therapeutic strategies to elevate p107 levels in tumor cells.
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