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Updated: Jun 10, 2026

Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
[Recent developments of pharmacogenomics in the treatment of colorectal cancers]
1UMRS CNRS 7054, faculté de médecine Paris XII, 94000 Créteil, France. : prof.astier@gmail.com
Abstract:
Colorectal cancer (CCR), which is one of the most common causes of cancer, has benefited from the major advances in the understanding of the intracellular signaling pathways implicated in the initiation, growing and local and metastasis dissemination of tumor, which have occurred during the 20 past years. The pharmacogenomics approach, especially the determination of the genetic polymorphisms, tries to find prognosis and predictive biomarkers permitting to identify patients who could benefit from a particular treatment or those exhibiting higher risks of toxicity. Among the numerous biomarkers, which have been studied, few are currently in use in clinical practice. The phenotyping of DPD and UGT1A1 activities, and to a lesser extent, its genotyping, appears as the most useful tool in terms of prediction of toxicities induced by two major drugs: 5-FU and irinotecan. For oxaliplatin, the determination of the polymorphisms of reparases and detoxification systems such as GSTpi seems interesting, but its exact place should be more defined. It is in the field of targeted therapies that the pharmacogenomics approach seems to be the more relevant. KRAS mutation is a dramatic example of single nucleotide polymorphism, which is able to identify a priori patients that could receive or not an anti-EGFR monoclonal antibody such as cetuximab or panitumumab. It is obvious that pre-clinical identification of molecular biomarkers predictive of the sensitivity of the drug targets, which subsequently implicate the selection of patients and the rational evaluation of responses, will be the cornerstone of any clinical trials concerning targeted therapies. Besides the determination of drug target polymorphisms, it is also important to consider those related to the distribution and metabolism. In this area, the determination of enzymatic activities should recover its place besides the genomic profiling.
Insights
Pharmacogenomics advances colorectal cancer treatment by identifying genetic biomarkers for drug toxicity and targeted therapy efficacy. DPD and UGT1A1 genotyping predict 5-FU and irinotecan toxicities, while KRAS mutation status guides anti-EGFR therapy selection.
Area of Science:
- Oncology
- Pharmacogenomics
- Molecular Biology
Background:
- Colorectal cancer (CRC) is a leading cause of cancer mortality.
- Recent advances in understanding intracellular signaling pathways have improved CRC treatment.
- Pharmacogenomics aims to identify biomarkers for personalized CRC treatment and toxicity prediction.
Purpose of the Study:
- To review the role of pharmacogenomics in predicting drug toxicity and efficacy in colorectal cancer.
- To highlight key biomarkers and their clinical utility in CRC pharmacotherapy.
- To emphasize the importance of pharmacogenomics in the development of targeted therapies for CRC.
Main Methods:
- Review of current literature on pharmacogenomics in colorectal cancer.
- Analysis of genetic polymorphisms and enzyme activities as predictive biomarkers.
- Discussion of specific drug-gene interactions (e.g., DPD/UGT1A1 with 5-FU/irinotecan, KRAS with anti-EGFR therapies).
Main Results:
- DPD and UGT1A1 phenotyping/genotyping are valuable for predicting 5-FU and irinotecan toxicity.
- KRAS mutation analysis is crucial for selecting patients for anti-EGFR monoclonal antibody therapy (cetuximab, panitumumab).
- Polymorphisms in drug metabolism and repair enzymes (e.g., GSTpi) warrant further investigation for oxaliplatin treatment.
Conclusions:
- Pharmacogenomic biomarkers are essential for personalized medicine in colorectal cancer.
- Identifying patients who will benefit from specific treatments or experience toxicity is key to optimizing CRC therapy.
- Integrating genomic profiling with enzymatic activity assessments will enhance the rational evaluation of targeted therapies in CRC clinical trials.
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Pharmacogenetics of Drug Metabolism: Overview
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu
Principles of Pharmacogenetics: Types of Genetic Variants
