Related Experiment Video
Updated: Jun 10, 2026

06:48
A Reporter Assay to Analyze Intronic microRNA Maturation in Mammalian Cells
Published on: June 16, 2022
The terminal loop region controls microRNA processing by Drosha and Dicer
1Department of Pharmacology, University of Minnesota, Minneapolis, MN 55455, USA.
Nucleic Acids Research
|July 28, 2010
Summary
A flexible terminal loop in primary microRNA transcripts is crucial for microRNA biogenesis. Mutations restricting this loop inhibit processing by Drosha and Dicer enzymes, reducing mature microRNA production.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- microRNAs (miRNAs) are key regulators of gene expression.
- The biogenesis of mature miRNAs from primary transcripts involves complex processing steps.
- The precise mechanisms governing miRNA processing remain incompletely understood.
Purpose of the Study:
- To investigate the role of the terminal loop region in human primary microRNA (pri-miRNA) transcripts during miRNA biogenesis.
- To determine the impact of mutations in the terminal loop on miRNA processing by key enzymes.
Main Methods:
- Site-directed mutagenesis to alter the terminal loop of pri-miRNA transcripts.
- In vitro processing assays using Drosha and Dicer enzymes.
- Transfection of mutated pri-miRNA into human cells to assess miRNA maturation.
Main Results:
- Mutations restraining the terminal loop inhibited both Drosha and Dicer processing of miRNA transcripts in vitro.
- These mutations led to reduced miRNA maturation in transfected human cells.
- Enzyme turnover on mutant transcripts may be reduced, contributing to processing inhibition.
Conclusions:
- A flexible terminal loop region is essential for efficient microRNA processing.
- The structural integrity of the terminal loop is a critical determinant of miRNA biogenesis.
- Understanding these mechanisms can inform strategies for modulating miRNA levels.
Related Concept Videos
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...
MicroRNAs
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA ends...
RNA Interference
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
RNA Interference
RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
Experimental RNAi
RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...

