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Updated: Jun 10, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
DNA methylation profiling in cancer
Yutaka Kondo1, Jean-Pierre J Issa
1Division of Molecular Oncology, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan. ykondo@aichi-cc.jp
Abstract:
Aberrant DNA methylation in the genome is found in almost all types of cancer and contributes to malignant transformation by silencing multiple tumour-suppressor genes, sometimes simultaneously. Therefore, deciphering the signature of DNA methylation in each tumour is required to better understand tumour behaviour and might be of benefit for clinical diagnostics and therapy. Recent technologies for high-throughput genome-wide DNA methylation analyses are promising and potent tools for epigenetic profiling. Since epigenetic therapy is now in clinical use or trials for several types of cancers, efficient epigenetic profiling is required. In this review, the current key technologies available to assess genome-wide DNA methylation are introduced and the implications of DNA methylation profiling in human cancers are discussed.
Insights
Aberrant DNA methylation patterns are hallmarks of cancer, often silencing tumor-suppressor genes. Understanding these epigenetic signatures through genome-wide DNA methylation profiling is crucial for cancer diagnostics and therapy.
Area of Science:
- Genomics
- Epigenetics
- Oncology
Background:
- Aberrant DNA methylation is prevalent in most cancers, contributing to malignant transformation by silencing tumor-suppressor genes.
- Understanding tumor-specific DNA methylation signatures is vital for improved diagnostics and therapeutic strategies.
Purpose of the Study:
- To review current key technologies for assessing genome-wide DNA methylation.
- To discuss the implications of DNA methylation profiling in human cancers.
Main Methods:
- Review of current high-throughput technologies for genome-wide DNA methylation analysis.
- Discussion of epigenetic profiling techniques.
Main Results:
- High-throughput technologies offer potent tools for epigenetic profiling.
- DNA methylation profiling provides insights into tumor behavior.
Conclusions:
- Efficient epigenetic profiling is essential, given the clinical use and trials of epigenetic therapies.
- DNA methylation profiling holds significant potential for cancer diagnostics and treatment.
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