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Published on: June 26, 2020
DNA damage signaling recruits the Rtt107-Slx4 scaffolds via Dpb11 to mediate replication stress response
Patrice Y Ohouo1, Francisco M Bastos de Oliveira, Beatriz S Almeida
1Graduate Program in Biochemistry, Molecular and Cell Biology, Weill Institute for Cell and Molecular Biology, Cornell University, 339 Weill Hall, Ithaca, New York 14853-7202, USA.
Abstract:
The DNA damage checkpoint kinase Mec1(ATR) is critical for maintaining the integrity of replication forks. Though it has been proposed to promote fork repair, the mechanisms by which Mec1 regulates DNA repair factors remain unclear. Here, we found that Mec1 mediates a key interaction between the fork protein Dpb11 and the DNA repair scaffolds Slx4-Rtt107 to regulate replication stress response. Dissection of the molecular basis of the interaction reveals that Slx4 and Rtt107 jointly bind Dpb11 and that Slx4 phosphorylation is required. Mutation of Mec1 phosphorylation sites in Slx4 disrupts its interaction with Dpb11 and compromises the cellular response to replisomes blocked by DNA alkylation. Multiple fork repair factors associate with Rtt107 or Slx4, supporting that Mec1-dependent assembly of the Rtt107-Slx4-Dpb11 complex functions to coordinate fork repair. Our results unveil how Mec1 regulates the Slx4 and Rtt107 scaffolds and establish a mechanistic link between DNA damage signaling and fork repair.
Insights
The DNA damage checkpoint kinase Mec1 (ATR) coordinates replication fork repair by linking Dpb11 to Slx4-Rtt107 scaffolds. Mec1-dependent phosphorylation of Slx4 is crucial for this interaction and cellular response to DNA alkylation damage.
Area of Science:
- Molecular Biology
- Cellular Biology
- DNA Replication and Repair
Background:
- The DNA damage checkpoint kinase Mec1 (ATR) is essential for maintaining replication fork integrity during cellular stress.
- The precise mechanisms by which Mec1 regulates DNA repair factors at replication forks remain incompletely understood.
Purpose of the Study:
- To elucidate the molecular mechanisms by which Mec1 regulates DNA repair factors at replication forks.
- To investigate the role of Mec1 in coordinating the response to replication stress.
Main Methods:
- Investigated protein-protein interactions using biochemical assays.
- Utilized site-directed mutagenesis to examine the role of Mec1 phosphorylation sites.
- Assessed cellular responses to DNA alkylation damage.
Main Results:
- Identified a critical interaction mediated by Mec1 between Dpb11 and the Slx4-Rtt107 DNA repair scaffolds.
- Demonstrated that Slx4 phosphorylation by Mec1 is required for its interaction with Dpb11.
- Showed that mutations in Mec1 phosphorylation sites on Slx4 impair the cellular response to replication stress induced by DNA alkylation.
Conclusions:
- Mec1 regulates the Slx4 and Rtt107 scaffolds, establishing a mechanistic link between DNA damage signaling and replication fork repair.
- The Mec1-dependent assembly of the Dpb11-Slx4-Rtt107 complex is vital for coordinating multiple fork repair factors to ensure genome stability.
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