Related Experiment Video
Updated: Jun 10, 2026

Sequence-specific and Selective Recognition of Double-stranded RNAs over Single-stranded RNAs by Chemically Modified Peptide Nucleic Acids
Published on: September 21, 2017
Ultrafast deactivation processes in the 2-aminopyridine dimer and the adenine-thymine base pair: similarities and
Yue-Jie Ai1, Feng Zhang, Gang-Long Cui
1College of Chemistry, Beijing Normal University, Beijing 100875, China.
Abstract:
2-Aminopyridine dimer has frequently been used as a model system for studying photochemistry of DNA base pairs. We examine here the relevance of 2-aminopyridine dimer for a Watson-Crick adenine-thymine base pair by studying UV-light induced photodynamics along two main hydrogen bridges after the excitation to the localized (1)pi pi(*) excited-state. The respective two-dimensional potential-energy surfaces have been determined by time-dependent density functional theory with Coulomb-attenuated hybrid exchange-correlation functional (CAM-B3LYP). Different mechanistic aspects of the deactivation pathway have been analyzed and compared in detail for both systems, while the related reaction rates have also be obtained from Monte Carlo kinetic simulations. The limitations of the 2-aminopyridine dimer as a model system for the adenine-thymine base pair are discussed.
More Related Videos
Related Concept Videos
DNA Base Pairing
Transfer RNA Synthesis
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Maxam-Gilbert Sequencing
Challenges of the Maxam-Gilbert Method
The...
Proofreading
Proofreading
Errors During Replication are Corrected by the DNA Polymerase Enzyme
Improving Translational Accuracy

