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Updated: Jun 9, 2026

Eukaryotic Polyribosome Profile Analysis
Published on: June 15, 2010
Tethering of poly(A)-binding protein interferes with non-translated mRNA decay from the 5' end in yeast
Tatsuhisa Tsuboi1, Toshifumi Inada
1Division of Biological Science, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan.
Abstract:
The decay of eukaryotic mRNA is triggered mainly by deadenylation, which leads to decapping and degradation from the 5' end of an mRNA. Poly(A)-binding protein has been proposed to inhibit the decapping process and to stabilize mRNA by blocking the recruitment of mRNA to the P-bodies where mRNA degradation takes place after stimulation of translation initiation. In contrast, several lines of evidence show that poly(A)-binding protein (Pab1p) has distinct functions in mRNA decay and translation in yeast. To address the translation-independent function of Pab1p in inhibition of decapping, we examined the contribution of Pab1p to the stability of non-translated mRNAs, an AUG codon-less mRNA or an mRNA containing a stable stem-loop structure at the 5'-UTR. Tethering of Pab1p stabilized non-translated mRNAs, and this stabilization did not require either the eIF4G-interacting domain of Pab1p or the Pab1p-interacting domain of eIF4G. In a ski2Δ mutant in which 3' to 5' mRNA degradation activity is defective, stabilization of non-translated mRNAs by the tethering of Pab1p lacking an eIF4G-interacting domain (Pab1-34Cp) requires a cap structure but not a poly(A) tail. In wild type cells, stabilization of non-translated mRNA by tethered Pab1-34Cp results in the accumulation of deadenylated mRNA. These results strongly suggest that tethering of Pab1p may inhibit the decapping reaction after deadenylation, independent of translation. We propose that Pab1p inhibits the decapping reaction in a translation-independent manner in vivo.
Insights
Poly(A)-binding protein (Pab1p) stabilizes non-translated mRNAs by inhibiting decapping, independent of translation initiation. This suggests Pab1p plays a direct role in preventing mRNA degradation after deadenylation.
Area of Science:
- Molecular Biology
- Yeast Genetics
- RNA Metabolism
Background:
- Eukaryotic mRNA decay is primarily initiated by deadenylation, followed by decapping and 5' degradation.
- Poly(A)-binding protein (Pab1p) is thought to inhibit decapping and stabilize mRNA by preventing its recruitment to P-bodies for degradation.
- Evidence suggests Pab1p has distinct roles in mRNA decay and translation in yeast.
Purpose of the Study:
- To investigate the translation-independent function of Pab1p in inhibiting mRNA decapping.
- To determine Pab1p's contribution to the stability of non-translated mRNAs.
Main Methods:
- Tethering of Pab1p to non-translated mRNAs (AUG-less or with 5'-UTR stem-loop).
- Analysis of mRNA stability in wild-type and ski2Δ yeast strains.
- Assessing the requirement of Pab1p/eIF4G interaction domains and mRNA features (cap, poly(A) tail) for stabilization.
Main Results:
- Tethered Pab1p stabilized non-translated mRNAs independently of its eIF4G-interacting domain.
- Stabilization in ski2Δ mutants required a cap structure but not a poly(A) tail.
- In wild-type cells, tethered Pab1p led to the accumulation of deadenylated mRNAs, indicating decapping inhibition.
Conclusions:
- Pab1p inhibits the decapping reaction in a translation-independent manner.
- Tethering Pab1p can prevent decapping after deadenylation, suggesting a direct role in mRNA decay regulation.
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