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Updated: Jun 8, 2026

Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification
Published on: November 15, 2017
Mass spectrometric protein identification using the global proteome machine
David Fenyö1, Jan Eriksson, Ronald Beavis
1The Rockefeller University, New York, NY, USA. fenyo@rockefeller.edu
Abstract:
Protein identification by mass spectrometry is widely used in biological research. Here, we describe how the global proteome machine (GPM) can be used for protein identification and for validation of the results. We cover identification by searching protein sequence collections and spectral libraries as well as validation of the results using expectation values, rho-diagrams, and spectrum databases.
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