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Related Experiment Video

Updated: Jun 8, 2026

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The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.

Aureliano Bombarely1, Naama Menda, Isaak Y Tecle

  • 1Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA.

Nucleic Acids Research
|October 12, 2010
PubMed
Summary
This summary is machine-generated.

The Sol Genomics Network (SGN) is a comprehensive database for Solanaceae family research, now including a transcriptome component and community-driven curation. It offers integrated genomic and phenotypic data for plant scientists.

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Area of Science:

  • Plant genomics
  • Bioinformatics
  • Database development

Background:

  • The Sol Genomics Network (SGN) is a clade-oriented database for the Solanaceae family and related species.
  • It currently hosts diverse biological data, including genome maps, sequences, phenotypes, and accessions.

Purpose of the Study:

  • To announce the addition of a new transcriptome component for RNA-seq and microarray data.
  • To highlight SGN's ongoing development as an open-source software project.
  • To emphasize the community-driven curation model and its integration with other genome databases.

Main Methods:

  • SGN utilizes a database architecture combining SGN-specific schemas with the community-developed Chado schema.
  • Data integration and analysis tools are continuously developed.
  • A community-driven curation model allows researchers to add and edit information via web tools.

Main Results:

  • A new transcriptome component has been implemented to store RNA-seq and microarray data.
  • The database architecture ensures compatibility with other genome databases through the Chado schema.
  • Over a hundred community annotators actively contribute to data curation.

Conclusions:

  • SGN provides a valuable, integrated resource for Solanaceae research.
  • The open-source development and community curation model foster collaboration and data accessibility.
  • The expanded data types and improved architecture enhance SGN's utility for plant scientists.