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DeltaBreed: A BrAPI-centric breeding data information system.

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DeltaBreed is a new, species-agnostic breeding data management system. It uses Breeding API (BrAPI) standards for interoperability, supporting diverse crop and livestock programs.

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Area of Science:

  • Agricultural Science
  • Bioinformatics
  • Computational Biology

Background:

  • Breeding programs require robust data management systems.
  • Interoperability between different breeding software is crucial.
  • Existing systems may lack species-agnostic capabilities.

Purpose of the Study:

  • Introduce DeltaBreed, a unified breeding data management system.
  • Describe DeltaBreed v1.0 features and BrAPI v2.1 compliance.
  • Demonstrate interoperability with BrAPI-compliant applications.

Main Methods:

  • Developed a RESTful microservice architecture for DeltaBreed.
  • Utilized BrAPI v2.1 Java Test Server as the primary database.
  • Implemented modules for germplasm, observation variables, experiments, genotypic data, and a genomic database.

Main Results:

  • DeltaBreed v1.0 is a minimum viable product supporting diverse breeding data.
  • Demonstrated successful interoperability with BrAPI-compliant software.
  • The system supports polyploid, multiallelic, and SNP genomic data.

Conclusions:

  • DeltaBreed is the first species-agnostic, fully BrAPI-compliant system for transactional breeding data management.
  • The system facilitates data capture and validation aligned with community standards.
  • Future versions will address limitations and expand functionality.