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Updated: Jun 7, 2026

Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification
Published on: November 15, 2017
Development of multidimensional liquid chromatography and application in proteomic analysis.
Mingxia Gao1, Dawei Qi, Peng Zhang
1Department of Chemistry, Fudan University, Shanghai, 200433, China.
Multidimensional liquid chromatography (MDLC) coupled with mass spectrometry offers high-speed, high-resolution, and sensitive proteome research. This review explores diverse MDLC strategies and novel techniques for advanced biological sample analysis.
Area of Science:
- Biochemistry
- Analytical Chemistry
- Proteomics
Background:
- Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) is a traditional method for biological sample separation.
- Multidimensional liquid chromatography (MDLC) has emerged as a powerful complementary technique.
- MDLC coupled with mass spectrometry is crucial for high-throughput proteome research.
Purpose of the Study:
- To review recent advancements in MDLC technologies and their applications in proteome analysis.
- To discuss the diverse combinations of chromatography modes used in MDLC systems.
- To highlight novel developments in MDLC techniques.
Main Methods:
- Ion-exchange chromatography (IEC) combined with reversed-phase liquid chromatography (RPLC) is a primary MDLC strategy.
- Various other chromatographic methods are employed for protein prefractionation.
- Exploration of novel MDLC technologies including ultra-high pressure systems, array-based separations, and monolithic materials.
Main Results:
- MDLC coupled with mass spectrometry provides high speed, resolution, and sensitivity for biological sample analysis.
- A wide array of MDLC strategies and combinations of separation modes are effective for proteome investigations.
- Emerging technologies like ultra-pressure systems and monolithic materials are enhancing MDLC capabilities.
Conclusions:
- MDLC is a versatile and highly effective approach for comprehensive proteome analysis.
- Continued development of MDLC techniques promises further improvements in sensitivity and throughput.
- MDLC represents a significant advancement in analytical methodologies for biological samples.
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