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Updated: Jun 7, 2026

Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules
Published on: April 25, 2025
pH and temperature dependent relaxation dynamics of Hoechst-33258: a time resolved fluorescence study
Nilotpal Barooah1, Jyotirmayee Mohanty, Haridas Pal
1Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Mumbai, 400 085, India.
Abstract:
The photophysical behavior of Hoechst 33258 (H33258) in aqueous solution has been studied by steady-state and time-resolved fluorescence measurements. The intriguing intramolecular geometrical orientations of the dye bring out major modulation on its photophysical behavior, especially in the fluorescence emission characteristics with pH. It has been seen that a change in the solution pH from 7 to 4.5 enhances the emission yield by ~20 fold and this change is ~80-fold on changing the pH from 1.5 to 4.5. While a fast flipping motion among the two benzimidazole rings is considered to be one of the most probable mechanisms for the fast fluorescence decay, a more planar structure of the dicationic form at pH 4.5 having a double bond character between the two benzimidazolium groups is suggested to be the most likely fluorescent species. A similar planar structure is in fact considered to be the fluorescent emitting species of H33258 on minor groove binding to DNA. On the basis of temperature dependent fluorescence decay dynamics explored for the dye in solutions at pH 7 and 4.5, it is understood that a nearly isoenergetic double-well excited state potential is possibly involved in the excited state relaxation dynamics of the dye at pH 7. On increasing the temperature, the conversion to the planar structure is facilitated from the non-planar LE state, enhancing the emission probability of the dye.
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