Related Experiment Video
Updated: Jun 6, 2026

Using a Pan-Viral Microarray Assay (Virochip) to Screen Clinical Samples for Viral Pathogens
Published on: April 27, 2011
Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory
Christopher M Robinson1, Gurdeep Singh, Cécile Henquell
1Howe Laboratory, Massachusetts Eye and Ear Infirmary, Department of Ophthalmology, Harvard Medical School, 243 Charles Street, Boston, MA 02114, USA.
Abstract:
Adenoviral infections are typically acute, self-limiting, and not associated with death. However, we present the genomic and bioinformatics analysis of a novel recombinant human adenovirus (HAdV-D56) isolated in France that caused a rare neonatal fatality, and keratoconjunctivitis in three health care workers who cared for the neonate. Whole genome alignments revealed the expected diversity in the penton base, hexon, E3, and fiber coding regions, and provided evidence for extensive recombination. Bootscan analysis confirmed recombination between HAdV-D9, HAdV-D26, HAdV-D15, and HAdV-D29 in the penton base and hexon proteins, centered around hypervariable loops within the putative proteins. Protein structure analysis of the fiber coding region revealed similarity with HAdV-D8, HAdV-D9, and HAdV-D53, possibly accounting for the ocular tropism of the virus. Based on these data, this virus appears to be a new HAdV-D type (HAdV-D56), underscoring the importance of recombination events in human adenovirus evolution and the emergence of new adenovirus pathogens.
Insights
A novel human adenovirus (HAdV-D56) caused a rare fatal neonatal infection and keratoconjunctivitis in healthcare workers. Genomic analysis revealed extensive recombination, suggesting HAdV-D56 is a new adenovirus type.
Area of Science:
- Virology
- Genomics
- Bioinformatics
Background:
- Human adenoviruses (HAdVs) are common viral pathogens.
- Typically, HAdV infections are acute, self-limiting, and rarely fatal.
Observation:
- A novel recombinant HAdV-D56 was isolated in France.
- This HAdV strain caused a rare fatal neonatal infection.
- It also caused keratoconjunctivitis in three healthcare workers.
Findings:
- Whole genome analysis revealed extensive recombination in HAdV-D56.
- Bootscan analysis indicated recombination with HAdV-D9, HAdV-D26, HAdV-D15, and HAdV-D29.
- Protein structure analysis suggested ocular tropism due to fiber protein similarity with other HAdV types.
Implications:
- HAdV-D56 represents a new HAdV-D type.
- Recombination plays a significant role in human adenovirus evolution.
- This highlights the emergence of novel adenovirus pathogens with potentially increased virulence or altered tropism.
More Related Videos
Related Concept Videos
Respiratory Syncytial Virus Disease
Viral Mutations
Rapid Identification of Pathogens
Human Virome

