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A Strategy to Identify Compounds that Affect Cell Growth and Survival in Cultured Mammalian Cells at Low-to-Moderate Throughput
Published on: September 22, 2019
Benzopyrazine derivatives: A novel class of growth factor receptor bound protein 7 antagonists
Nigus D Ambaye1, Menachem J Gunzburg, Reece C C Lim
1Department of Biochemistry and Molecular Biology, Monash University, Wellington Road, Victoria 3800, Australia.
Abstract:
Growth factor receptor bound protein 7 (Grb7) is an adapter protein that functions as a downstream effector of growth factor mediated signal transduction. Over-expression of Grb7 has been implicated in a variety of cancers such as breast, blood, pancreatic, esophageal, and gastric carcinomas. Inhibition of Grb7 has been shown to reduce the migratory and proliferative potential of these cancers, making it an attractive therapeutic target. Starting with a known peptide antagonist, the present work reports the application of a succession of computational ligand design tools comprising a ligand shape based similarity search, molecular docking and a 2D-similarity search to identify small molecular antagonists of the Grb7-SH2 domain from the NCI chemical database. Binding to the Grb7-SH2 domain was then experimentally tested using melting point shift assays and isothermal titration calorimetry. Overall, a total of 11 benzopyrazine based small molecular antagonists were identified with affinity for the Grb7-SH2 domain. Representative compounds tested using ITC were revealed to possess moderate binding affinity in the low micromolar range. Finally, the lead compound (NSC642056) was found to reduce the growth of a Grb7-expressing breast cancer cell line with an IC(50) of 86μM. It is expected that the identified antagonists will be useful additions to further explore the function of Grb7 and for the development of inhibitors with therapeutic potential.
Insights
Researchers identified novel small molecule antagonists for Growth factor receptor bound protein 7 (Grb7), a protein implicated in various cancers. These Grb7 inhibitors show potential for reducing cancer cell growth and developing new cancer therapies.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- Growth factor receptor bound protein 7 (Grb7) is a key adapter protein in growth factor signaling.
- Overexpression of Grb7 is linked to multiple cancer types, including breast, blood, and gastric carcinomas.
- Inhibiting Grb7 can decrease cancer cell migration and proliferation, highlighting its therapeutic potential.
Purpose of the Study:
- To identify small molecule antagonists targeting the Grb7-SH2 domain.
- To computationally design and experimentally validate novel Grb7 inhibitors.
- To assess the therapeutic potential of identified compounds in cancer cell models.
Main Methods:
- Utilized computational tools: ligand shape-based similarity search, molecular docking, and 2D-similarity search.
- Screened the NCI chemical database for potential Grb7-SH2 domain binders.
- Experimentally validated binding using melting point shift assays and isothermal titration calorimetry (ITC).
Main Results:
- Identified 11 benzopyrazine-based small molecule antagonists with affinity for the Grb7-SH2 domain.
- Compounds demonstrated moderate binding affinity in the low micromolar range via ITC.
- The lead compound, NSC642056, inhibited Grb7-expressing breast cancer cell growth with an IC(50) of 86μM.
Conclusions:
- Successfully identified novel small molecule antagonists for Grb7.
- These compounds represent promising leads for further investigation into Grb7 function and therapeutic inhibition.
- The identified antagonists could aid in developing new therapeutic strategies for Grb7-associated cancers.
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