Related Experiment Video
Updated: Jun 5, 2026

Quantitative, Real-time Analysis of Base Excision Repair Activity in Cell Lysates Utilizing Lesion-specific Molecular Beacons
Published on: August 6, 2012
Variation in base excision repair capacity
David M Wilson1, Daemyung Kim, Brian R Berquist
1Laboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health, Baltimore, MD 21224, United States. wilsonda@mail.nih.gov
Abstract:
The major DNA repair pathway for coping with spontaneous forms of DNA damage, such as natural hydrolytic products or oxidative lesions, is base excision repair (BER). In particular, BER processes mutagenic and cytotoxic DNA lesions such as non-bulky base modifications, abasic sites, and a range of chemically distinct single-strand breaks. Defects in BER have been linked to cancer predisposition, neurodegenerative disorders, and immunodeficiency. Recent data indicate a large degree of sequence variability in DNA repair genes and several studies have associated BER gene polymorphisms with disease risk, including cancer of several sites. The intent of this review is to describe the range of BER capacity among individuals and the functional consequences of BER genetic variants. We also discuss studies that associate BER deficiency with disease risk and the current state of BER capacity measurement assays.
Insights
Base excision repair (BER) is crucial for DNA damage repair. Genetic variations in BER influence disease risk, highlighting the importance of understanding individual repair capacity.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Base excision repair (BER) is the primary pathway for repairing spontaneous DNA damage.
- BER handles various lesions including oxidative damage, abasic sites, and single-strand breaks.
- BER defects are implicated in cancer, neurodegenerative diseases, and immunodeficiency.
Purpose of the Study:
- To review the variability in base excision repair (BER) capacity among individuals.
- To explore the functional consequences of genetic variants in BER genes.
- To discuss the association between BER deficiency and disease risk.
Main Methods:
- Literature review of studies on DNA repair gene variability.
- Analysis of research linking BER gene polymorphisms to disease susceptibility.
- Examination of current assays for measuring BER capacity.
Main Results:
- Significant sequence variability exists in DNA repair genes.
- Specific BER gene polymorphisms are associated with increased risk for various cancers.
- Individual differences in BER capacity can impact disease susceptibility.
Conclusions:
- Understanding the functional impact of BER genetic variants is essential.
- BER capacity assays are valuable tools for assessing disease risk.
- Further research into BER deficiency and disease is warranted.
Related Concept Videos
Long-patch Base Excision Repair
Base Excision Repair
The first step of...
Base Excision Repair
The first step of...
Nucleotide Excision Repair
Nucleotide Excision Repair
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Nucleotide Excision Repair

