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Updated: Jun 5, 2026

Microbiological Rapid On-Site Evaluation for Pulmonary Infectious Diseases
Published on: March 1, 2024
[Pneumocystis jirovecii: what does this mean?]
M Herrag1, M T Elfassy Fihry, A Alaoui Yazidi
1Service de pneumologie, hôpital Ibn Nafis, CHU Mohammed VI, faculté de médecine et de pharmacie, université Cadi Ayyad, Marrakech, Maroc. herrag.repir@gmail.com
Abstract:
Pneumocystis was discovered nearly a century ago. It causes fatal pneumonia in immunocompromised individuals, especially in AIDS patients. Knowledge of the different species remained rudimentary until the mid-eighties when DNA analysis revealed its extensive diversity. In fact, it is no longer considered as a zoonosis. Pneumocystis organisms derived from different hosts have very different DNA sequences, indicating multiple species. Due to the genetic and functional disparities, the organism that causes human PCP is now named Pneumocystis jirovecii/Frenkel, 1999. We continue to call Pneumocystis carinii the species found in rats. This will allow for a single international language and avoid confusion. Changing the organism's name does not preclude the use of the well-known acronym PCP because it can also be read "PneumoCystis Pneumonia." The DNA sequences and genotypage have shown that variations exist among samples of P. jiroveci. Molecular biology is helpful in the study of the mechanisms of transmission, which can only occur in the same host and the different resistances as well as providing a better understanding of the relationship between host and pathogen. P. jirovecii pneumonia in immunosuppressed patients was previously thought to result from the reactivation of a latent infection acquired in early childhood. However, today, it is believed to result from a new infection from an exogenous source.
Insights
Pneumocystis pneumonia (PCP) is caused by Pneumocystis jirovecii, a diverse fungal species. Recent studies show PCP results from new infections, not reactivation, and transmission is host-specific.
Area of Science:
- Medical Mycology
- Infectious Diseases
- Molecular Biology
Background:
- Pneumocystis causes fatal pneumonia in immunocompromised individuals, particularly AIDS patients.
- Historically, Pneumocystis was considered a zoonosis, with limited understanding of its species diversity.
- Advances in DNA analysis have revealed extensive genetic diversity within Pneumocystis organisms.
Purpose of the Study:
- To clarify the nomenclature and species diversity of Pneumocystis.
- To understand the transmission dynamics and host-pathogen relationship of Pneumocystis jirovecii.
- To investigate the source of Pneumocystis jirovecii pneumonia (PCP) in immunosuppressed patients.
Main Methods:
- DNA sequencing and genotyping of Pneumocystis organisms from various hosts.
- Comparative analysis of genetic sequences to determine species and variations.
- Review of existing literature on Pneumocystis transmission and pathogenesis.
Main Results:
- Pneumocystis is not a zoonosis; distinct host-specific species exist.
- The organism causing human PCP is now named Pneumocystis jirovecii.
- Genetic variations within P. jirovecii samples have been identified.
- Transmission is limited to the same host, suggesting exogenous reinfection for PCP.
Conclusions:
- The renaming of the human pathogen to Pneumocystis jirovecii provides clarity and an international standard.
- Understanding P. jirovecii's genetic diversity aids in studying host-pathogen interactions and resistance.
- Current evidence suggests PCP in immunosuppressed patients arises from new, exogenous infections rather than reactivation.
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