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Updated: Jun 5, 2026

Development and Application of Rapamycin-regulated Tyrosine Phosphatases
Published on: September 6, 2024
mTOR-dependent regulation of PHLPP expression controls the rapamycin sensitivity in cancer cells
Jianyu Liu1, Payton D Stevens, Tianyan Gao
1Markey Cancer Center, University of Kentucky, Lexington, Kentucky 40536-0509, USA.
Abstract:
PHLPP belongs to a novel family of protein phosphatases that serve as negative regulators of Akt. There are two isoforms, PHLPP1 and PHLPP2, identified in this family. Our previous studies indicated a tumor suppressor role of both PHLPP isoforms in colon cancer. Here we report that the expression of PHLPP is controlled by mTOR-dependent protein translation in colon and breast cancer cells. Treating cells with rapamycin or knockdown of mTOR using RNAi results in a marked decrease of PHLPP protein expression. In contrast, stable knockdown of TSC2, a negative regulator of mTOR activity, increases PHLPP expression. The rapamycin-mediated down-regulation of PHLPP is blocked by expression of a rapamycin-insensitive mutant of p70S6K. In addition, depletion of 4E-BP1 expression by RNAi results in an increase of PHLPP expression and resistance to rapamycin-induced down-regulation. Moreover, inhibition of mTOR activity by amino acid or glucose starvation reduces PHLPP expression in cells. Functionally, we show that rapamycin-mediated inhibition of PHLPP expression contributes to rapamycin resistance in colon cancer cells. Thus, our studies identify a compensatory feedback regulation in which the activation of Akt is inhibited by up-regulation of PHLPP through mTOR, and this mTOR-dependent expression of PHLPP subsequently determines the rapamycin sensitivity of cancer cells.
Insights
PHLPP phosphatases regulate Akt and tumor suppression. mTOR controls PHLPP expression, impacting cancer cell sensitivity to rapamycin, revealing a feedback loop crucial for cancer therapy.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- PHLPP (PH domain and Leucine rich repeat Protein Phosphatase) isoforms, PHLPP1 and PHLPP2, are negative regulators of Akt signaling.
- Previous research established a tumor suppressor role for PHLPP isoforms in colon cancer.
Purpose of the Study:
- To investigate the regulatory mechanisms controlling PHLPP expression in cancer cells.
- To elucidate the role of mTOR-dependent translation in PHLPP expression.
- To determine the functional consequence of PHLPP regulation on cancer cell response to rapamycin.
Main Methods:
- Utilized rapamycin treatment and RNA interference (RNAi) to modulate mTOR activity and PHLPP expression.
- Investigated the effects of TSC2 knockdown and expression of a rapamycin-insensitive p70S6K mutant.
- Examined the impact of 4E-BP1 depletion and amino acid/glucose starvation on PHLPP levels.
- Assessed the functional role of PHLPP expression in rapamycin resistance in colon cancer cells.
Main Results:
- mTOR-dependent protein translation controls PHLPP expression in colon and breast cancer cells.
- Rapamycin treatment or mTOR knockdown decreased PHLPP protein levels, while TSC2 knockdown increased them.
- Rapamycin-mediated PHLPP down-regulation was linked to p70S6K activity and blocked by 4E-BP1 depletion.
- Inhibition of mTOR activity via nutrient starvation reduced PHLPP expression.
- Rapamycin-induced PHLPP inhibition contributed to rapamycin resistance in colon cancer cells.
Conclusions:
- Identified a compensatory feedback loop where mTOR activation up-regulates PHLPP, inhibiting Akt.
- mTOR-dependent PHLPP expression is a key determinant of cancer cell sensitivity to rapamycin.
- This regulatory pathway offers potential therapeutic targets for overcoming rapamycin resistance in cancer.
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